Uses of Class
showMol.Atom

Packages that use Atom

showMol

Uses of Atom in showMol

Methods in showMol that return Atom

Atom	Molecule.getAtom(int idx) Provides the indicated atom
Atom[]	MoleculeLoader.getAtoms() Provides an array containing the Atom objects for this molecule.

Methods in showMol that return types with arguments of type Atom

java.util.Vector<Atom>

MoleculeLoader.getAtomVector() Provides a Vector containing the Atom objects

Methods in showMol with parameters of type Atom

void	Wire.addBond(Atom a) Adds a wire from the central atom (defined in the constructor) to the specified atom.

Method parameters in showMol with type arguments of type Atom

static void

MoleculeLoader.createBonds(java.util.Vector<Atom> a, java.util.Vector<Bond> b, java.util.Vector<Wire> w) Creates Bonds for the a set of atoms based upon proximity.

Constructors in showMol with parameters of type Atom

Bond(Atom a1, Atom a2)
Creates a bond between two atoms.

Wire(Atom a)
Constructs wires framework centered at the specified atom.