A B C D E F G H I K L M N O P Q R S T U W X

G

Gas - Class in edu.davidson.chm.equilibria

This project contains the files necessary to solve arbitrary equilibrium problems

Gas() - Constructor for class edu.davidson.chm.equilibria.Gas

Gas(String, ChemSystem) - Constructor for class edu.davidson.chm.equilibria.Gas

The minimal requirements for defining a Gas phase are a descriptive label and the chemical system that contains the phase.

Gaussian - Class in edu.davidson.chm.waveFunction

Defines a Gaussian Basis Function

Gaussian() - Constructor for class edu.davidson.chm.waveFunction.Gaussian

Gaussian(int, String) - Constructor for class edu.davidson.chm.waveFunction.Gaussian

Creates a basis function that contains nbr gaussian functions

Gaussian(int, String, double, double, double) - Constructor for class edu.davidson.chm.waveFunction.Gaussian

Creates a basis function that contains nbr gaussian functions and defines the first gaussian function.

getAbsorbance(double[]) - Method in class stoppedFlow.StoppedFlow

Returns the absorbance for a set of molar concentrations.

getAbsorbanceDataSet() - Method in class stoppedFlow.StoppedFlow

Returns the absorbance data set from the last simulation.

getAbsorbanceDataSet(int) - Method in class stoppedFlow.StoppedFlow

Returns the absorbance at index _i.

getAcid() - Method in class edu.davidson.chm.equilibria.Gas

Returns null, because there is no solvent or conjugate acid in this type of phase.

getAcid() - Method in class edu.davidson.chm.equilibria.Liquid

Returns null, because there is no solvent or conjugate acid in this type of phase.

getAcid() - Method in class edu.davidson.chm.equilibria.Phase

Returns the conjugate acid of the solvent for a solution with a protic solvent.

getAcid() - Method in class edu.davidson.chm.equilibria.Solid

Returns null, because there is no solvent or conjugate acid in this type of phase.

getAcid() - Method in class edu.davidson.chm.equilibria.Solution

Returns the conjugate acid of the solvent for a solution with a protic solvent.

getActivity(String, String) - Method in class chemEquilibria.ChemEquilibria

Returns the activity of the ChemSpecies in the Phase.

getActivity() - Method in class edu.davidson.chm.equilibria.Species

Returns the activity of the species.

getActivityCoefficient() - Method in class edu.davidson.chm.equilibria.Species

Returns the activity coefficient for the species.

getAlpha() - Method in class showStructure.UnitCell

getAnalConc(String, String) - Method in class chemEquilibria.ChemEquilibria

Returns the analytical molar concentration of the ChemSpecies in the Phase.

getAnalConc() - Method in class edu.davidson.chm.equilibria.Species

Returns the analytical concentration (mole/L)

getAnalMass() - Method in class edu.davidson.chm.equilibria.Species

Returns the analytical mass in grams

getAnalMoles(String, String) - Method in class chemEquilibria.ChemEquilibria

Returns the analytical moles of the ChemSpecies in the Phase.

getAnalMoles() - Method in class edu.davidson.chm.equilibria.Species

Returns the analytical number of moles

getAnalPressure() - Method in class edu.davidson.chm.equilibria.Species

Returns the analytical partial pressure.

getAngular(double, double) - Method in class edu.davidson.chm.waveFunction.HydrogenicWaveFunction

Returns the value of the angular component of the wave function for a given set of angles theta and phi.

getAnionCounterion() - Method in class edu.davidson.chm.equilibria.ChemSystem

Returns the generic X- ChemSpecies, which is used to arbitrarily balance charge.

getAppletInfo() - Method in class balance.Balance

getAppletInfo() - Method in class bulb.Bulb

getAppletInfo() - Method in class bulbs.Bulbs

getAppletInfo() - Method in class calorimeter.Calorimeter

getAppletInfo() - Method in class chemEquilibria.ChemEquilibria

getAppletInfo() - Method in class data.Data

getAppletInfo() - Method in class electronDensity.ElectronDensity

getAppletInfo() - Method in class manometer.Manometer

getAppletInfo() - Method in class piston.Piston

getAppletInfo() - Method in class piston3.Piston3

getAppletInfo() - Method in class showHybrid.ShowHybrid

getAppletInfo() - Method in class showIsosurface.ShowIsosurface

getAppletInfo() - Method in class showMol.ShowMol

getAppletInfo() - Method in class showStructure.ShowStructure

getAppletInfo() - Method in class spectrophotometer.Spectrophotometer

getAppletInfo() - Method in class stoppedFlow.StoppedFlow

getAppletInfo() - Method in class thermometer.Thermometer

getAtom(int) - Method in class showMol.Molecule

Provides the indicated atom

getAtomGroupTranslation() - Method in class showStructure.ShowStructure

getAtomicNumber() - Method in class showMol.Atom

Provides the atomic number of the atom.

getAtoms() - Method in class showMol.MoleculeLoader

Provides an array containing the Atom objects for this molecule.

getAtomTranslation(int) - Method in class showStructure.AtomGroup

Returns virtual world translation of the specified atom.

getAtomVector() - Method in class showMol.MoleculeLoader

Provides a Vector containing the Atom objects

getAutoChargeBalance() - Method in class edu.davidson.chm.equilibria.Phase

Returns the autoChargeBalance property

getAutodissociation() - Method in class edu.davidson.chm.equilibria.Solution

Returns the autodissociation reaction for this solution, if the solvent is protic.

getBallAndStickTransformGroup() - Method in class showMol.Atom

Provides the TransformGroup for the Ball and Stick representation of the atom.

getBase() - Method in class edu.davidson.chm.equilibria.Gas

Returns null, because there is no solvent or conjugate base in this type of phase.

getBase() - Method in class edu.davidson.chm.equilibria.Liquid

Returns null, because there is no solvent or conjugate base in this type of phase.

getBase() - Method in class edu.davidson.chm.equilibria.Phase

Returns the conjugate base of the solvent for a solution with a protic solvent.

getBase() - Method in class edu.davidson.chm.equilibria.Solid

Returns null, because there is no solvent or conjugate base in this type of phase.

getBase() - Method in class edu.davidson.chm.equilibria.Solution

Returns the conjugate base of the solvent for a solution with a protic solvent.

getBeta() - Method in class showStructure.UnitCell

getBonds() - Method in class showMol.MoleculeLoader

Provides an array containing the Bond objects for this molecule.

getBranchGroup() - Method in class showHybrid.Arrow

getBranchGroup() - Method in class showIsosurface.Orbital

Returns the BranchGroup object for the orbital

getBranchGroup() - Method in class showMol.Molecule

Provides the BranchGroup for the molecule.

getCationCounterion() - Method in class edu.davidson.chm.equilibria.ChemSystem

Returns the generic X+ ChemSpecies, which is used to arbitrarily balance charge.

getCellA() - Method in class showStructure.UnitCell

getCellB() - Method in class showStructure.UnitCell

getCellC() - Method in class showStructure.UnitCell

getCellType() - Method in class showStructure.UnitCell

Cell Types: 1 cubic (simple cubic) 2 body-centered cubic (bcc) 3 face-centered cubic (fcc)

getCenter() - Method in class showMol.Molecule

getCharge() - Method in class edu.davidson.chm.equilibria.ChemSpecies

Returns the charge of the ChemicalSpecies.

getCharge() - Method in class edu.davidson.chm.equilibria.Species

Returns the charge on the species.

getChargeBalance(String) - Method in class chemEquilibria.ChemEquilibria

Returns a string representing the charge balance equation for indicated phase.

getChargeBalance(Phase) - Method in class edu.davidson.chm.equilibria.Equilibria

Returns a string representing the charge balance relation for the phase.

getChemSpecies() - Method in class edu.davidson.chm.equilibria.Species

Returns the ChemSpecies for this Species.

getChemSystem() - Method in class edu.davidson.chm.equilibria.Phase

Returns the chemical system in which the phase exists

getChemSystem() - Method in class edu.davidson.chm.equilibria.Species

Returns the chemical system in which the species exists

getChildMask() - Method in class showIsosurface.Atom

Returns the ChildMask for the atom SwitchGroup.

getChildMask(int) - Method in class showIsosurface.ShowIsosurface

Returns the Switch child mask for the orbitals on the specified atom

getChildMask(int, int) - Method in class showIsosurface.ShowIsosurface

Returns the Switch child mask setting for a specific orbital.

getChiSq() - Method in class chemEquilibria.ChemEquilibria

Returns the chi-square value for the last curve-fitting procedure.

getChiSq() - Method in class edu.davidson.chm.equilibria.Titration

Returns the chi-squared value

getCoefficient(Species) - Method in class edu.davidson.chm.equilibria.HalfReaction

Returns the stoichiometric coefficient of the given species.

getCoefficient(String) - Method in class edu.davidson.chm.equilibria.HalfReaction

Returns the stoichiometric coefficient of the species with the given label.

getCoefficient(Species) - Method in class edu.davidson.chm.equilibria.Reaction

Returns the stoichiometric coefficient of the given species.

getCoefficient(String) - Method in class edu.davidson.chm.equilibria.Reaction

Returns the stoichiometric coefficient of the species with the given label.

getCoefficients() - Method in class edu.davidson.chm.equilibria.HalfReaction

Returns an array of the stoichiometric coefficients for the species in the reaction

getCoefficients() - Method in class edu.davidson.chm.equilibria.Reaction

Returns an array of the stoichiometric coefficients for the species in the reaction

getColor(double) - Method in class spectrophotometer.Spectrophotometer

Returns the color associated with the specified wavelength.

getColor(int, int, int) - Method in class stoppedFlow.StoppedFlow

Returns the color with the indicated red, green, and blue components.

getColor(double[]) - Method in class stoppedFlow.StoppedFlow

Returns the color for a set of concentrations.

getConc(String, String) - Method in class chemEquilibria.ChemEquilibria

Returns the molar concentration of the ChemSpecies in the Phase.

getConc() - Method in class edu.davidson.chm.equilibria.Species

Returns the molar concentration.

getCovalentRadius() - Method in class showMol.Atom

Provides the covalent radius (in angstroms) for the atom.

getCovariance() - Method in class edu.davidson.chm.equilibria.Titration

Returns the covariance matrix from the last execution of the fit method.

getCPKColor() - Method in class showMol.Atom

Provides the Color3f object for the atom's CPK color.

getData() - Method in class data.DataSet

Gets all data in the set.

getDataSet() - Method in class stoppedFlow.StoppedFlow

Returns the data set from the last simulation.

getDataSet(int) - Method in class stoppedFlow.StoppedFlow

Returns the data set for species _n.

getDataSet(int, int) - Method in class stoppedFlow.StoppedFlow

Returns the concentration of species _n at index _i.

getDatum(int) - Method in class data.DataSet

Gets point pt in the data set

getDensity(String) - Method in class chemEquilibria.ChemEquilibria

Returns the density (in grams/mL) of the Phase.

getDensity() - Method in class edu.davidson.chm.equilibria.Gas

Returns the density of the gas.

getDensity() - Method in class edu.davidson.chm.equilibria.Phase

Returns the density of the phase in grams per milliliter

getDerivative(int) - Method in class chemEquilibria.ChemEquilibria

Returns the derivative of an experimental titration curve at the _n-th point.

getDerivative(int) - Method in class edu.davidson.chm.equilibria.Titration

Returns the derivative of the titration curve at the indicated index.

getDerivative2(int) - Method in class chemEquilibria.ChemEquilibria

Returns the second derivative of an experimental titration curve at the _n-th point.

getDerivative2(int) - Method in class edu.davidson.chm.equilibria.Titration

Returns the second derivative of the titration curve at the indicated index.

getDiameter() - Method in class manometer.Manometer

Returns the diameter of a tube in millimeters

getDielectricConstant() - Method in class edu.davidson.chm.equilibria.Phase

Returns the dielectric constant of the phase

getEDHEa() - Method in class edu.davidson.chm.equilibria.Phase

Returns the Extended Debye-Huckel Equations a parameter, which appears in the numerator of the expression for ln f.

getEDHEb() - Method in class edu.davidson.chm.equilibria.Phase

Returns the Extended Debye-Huckel Equations b parameter in units of 1/angstrom, which appears in the denominator of the expression for ln f.

getEquation() - Method in class edu.davidson.chm.equilibria.HalfReaction

Returns a string representation of the half-reaction.

getEquation() - Method in class edu.davidson.chm.equilibria.Reaction

Returns a string representation of the reaction.

getEquivalents() - Method in class edu.davidson.chm.equilibria.HalfReaction

Returns the number of equivalents (n)

getFractionLiquid() - Method in class manometer.Manometer

Returns the fraction of available tube filled with mercury.

getFW() - Method in class edu.davidson.chm.equilibria.ChemSpecies

Returns the formula weight (g/mole) of the ChemicalSpecies.

getFW() - Method in class edu.davidson.chm.equilibria.Species

Returns the formula weight of the species

getGamma() - Method in class showStructure.UnitCell

getGoodnessOfFit() - Method in class chemEquilibria.ChemEquilibria

Returns the goodness-of-fit for the curve-fitting procedure.

getGoodnessOfFit() - Method in class edu.davidson.chm.equilibria.Titration

Returns the goodness-of-fit

getHalfReaction(String) - Method in class edu.davidson.chm.equilibria.ChemSystem

Returns the half-reaction with the indicated label

getHalfReactionPotential(String) - Method in class chemEquilibria.ChemEquilibria

Returns the potential in volts for the half-reaction.

getHalfReactions() - Method in class edu.davidson.chm.equilibria.ChemSystem

Returns an array of the half-reactions in the system

getHydrogen_Ion() - Method in class edu.davidson.chm.equilibria.ChemSystem

Returns the Hydrogen_Ion ChemSpecies.

getHydroxide_Ion() - Method in class edu.davidson.chm.equilibria.ChemSystem

Returns the Hydroxide_Ion ChemSpecies.

getID() - Method in class edu.davidson.chm.waveFunction.WaveFunction

Returns the id of the wave function

getIndexedTriangleArray() - Method in class showIsosurface.Isosurface

Provides the IndexedTriangleArray object for the isosurface

getInfo() - Method in class edu.davidson.chm.equilibria.ChemSystem

Returns information about this class

getInfo() - Method in class edu.davidson.chm.equilibria.Equilibria

Returns information about this class

getInfo() - Method in class edu.davidson.chm.equilibria.Gas

Returns information about this class

getInfo() - Method in class edu.davidson.chm.equilibria.HalfReaction

Returns information about this class

getInfo() - Method in class edu.davidson.chm.equilibria.Liquid

Returns information about this class

getInfo() - Method in class edu.davidson.chm.equilibria.Phase

Returns information about this class

getInfo() - Method in class edu.davidson.chm.equilibria.Reaction

Returns information about this class

getInfo() - Method in class edu.davidson.chm.equilibria.Solid

Returns information about this class

getInfo() - Method in class edu.davidson.chm.equilibria.Solution

Returns information about this class

getInfo() - Method in class edu.davidson.chm.equilibria.Species

Returns information about this class

getInfo() - Method in class edu.davidson.chm.equilibria.Titration

Returns information about this class

getInfo() - Method in class showIsosurface.Atom

Returns name, version, copyright, and author information about this class.

getInfo() - Method in class showIsosurface.Isosurface

Returns name, version, copyright, and author information about this class.

getInfo() - Method in class showIsosurface.Orbital

Returns name, version, copyright, and author information about this class.

getIonicStrength(String) - Method in class chemEquilibria.ChemEquilibria

Returns the ionic strength of the phase in mole/L.

getIonicStrength() - Method in class edu.davidson.chm.equilibria.Gas

Returns zero, because ionic strength has no meaning for this phase

getIonicStrength() - Method in class edu.davidson.chm.equilibria.Liquid

Returns zero, because ionic strength has no meaning for this phase

getIonicStrength() - Method in class edu.davidson.chm.equilibria.Phase

Returns the ionic strength of the phase

getIonicStrength() - Method in class edu.davidson.chm.equilibria.Solid

Returns zero, because ionic strength has no meaning for this phase

getIonicStrength() - Method in class edu.davidson.chm.equilibria.Solution

Returns the ionic strength (mole/L) for the solution.

getIonSize() - Method in class edu.davidson.chm.equilibria.ChemSpecies

Returns the Debye-Huckel ion-size parameter in angstroms.

getIonSize() - Method in class edu.davidson.chm.equilibria.Species

Returns the Debye-Huckel ion size parameter in angstroms

getIsAnimate() - Method in class showStructure.ShowStructure

getIsAuto() - Method in class edu.davidson.chm.equilibria.Reaction

Returns the isAuto property, which indicates whether this reaction is an autodissociation reaction

getIsHomogeneous() - Method in class edu.davidson.chm.equilibria.Reaction

Returns the isHomogeneous property, which indicates whether all reactants and products in the reaction exist in the same phase.

getIsIdeal() - Method in class edu.davidson.chm.equilibria.ChemSystem

Returns the isIdeal property.

getIsIsobaric() - Method in class edu.davidson.chm.equilibria.ChemSystem

Returns true if the system is isobaric.

getIsosurface(int) - Method in class showIsosurface.Orbital

Provides the requested Isosurface object

getIsProtic() - Method in class edu.davidson.chm.equilibria.Phase

Returns true if the phase is a solution with a protic solvent

getK(String) - Method in class chemEquilibria.ChemEquilibria

Returns the equilibrium constant for the reaction at the reference temperature

getK(String, double) - Method in class chemEquilibria.ChemEquilibria

Returns the equilibrium constant for the reaction at the indicated temperature

getK() - Method in class edu.davidson.chm.equilibria.Reaction

Returns the thermodynamic equilibrium constant at the reference temperature

getK(double) - Method in class edu.davidson.chm.equilibria.Reaction

Returns the equilibrium constant at the indicated temperature.

getL() - Method in class edu.davidson.chm.waveFunction.HydrogenicWaveFunction

Returns the angular momentum quantum number

getLabel() - Method in class edu.davidson.chm.equilibria.ChemSpecies

Returns the descriptive label of the ChemSpecies.

getLabel() - Method in class edu.davidson.chm.equilibria.ChemSystem

Returns the chemical system label

getLabel() - Method in class edu.davidson.chm.equilibria.HalfReaction

Returns the label for the half-reaction

getLabel() - Method in class edu.davidson.chm.equilibria.Phase

Returns the phase label

getLabel() - Method in class edu.davidson.chm.equilibria.Reaction

Returns the label of the reaction

getLabel() - Method in class edu.davidson.chm.equilibria.Species

Returns the phase label

getLeftHeight() - Method in class manometer.Manometer

Returns the height of the left (closed side) column of mercury in millimeters.

getLeftVolume() - Method in class bulbs.Bulbs

Returns the volume of the left bulb in liters

getM() - Method in class edu.davidson.chm.waveFunction.HydrogenicWaveFunction

Returns the magnetic quantum number

getMass(String, String) - Method in class chemEquilibria.ChemEquilibria

Returns the actual mass (in grams) of ChemSpecies in the Phase.

getMass() - Method in class edu.davidson.chm.equilibria.Liquid

Returns the mass in grams of the liquid.

getMass() - Method in class edu.davidson.chm.equilibria.Phase

Returns the total mass of the phase in grams

getMass() - Method in class edu.davidson.chm.equilibria.Solid

Returns the mass in grams of the solid.

getMass() - Method in class edu.davidson.chm.equilibria.Species

Returns the mass in grams

getMassBalance(int) - Method in class chemEquilibria.ChemEquilibria

Returns a string containing the mass balance equation

getMassBalance() - Method in class edu.davidson.chm.equilibria.Equilibria

Returns an array of strings representing the mass balance relations for the chemical system.

getMaxR(double) - Method in class edu.davidson.chm.waveFunction.Gaussian

getMaxR(double) - Method in class edu.davidson.chm.waveFunction.HybridWaveFunction

Returns an estimate of the maximum displacement at the point where psi*psi is the indicated fraction of the maximum value of psi*psi.

getMaxR(double) - Method in class edu.davidson.chm.waveFunction.HydrogenicWaveFunction

Returns an estimate of the maximum displacement at the point where psi*psi is the indicated fraction of the maximum value of psi*psi.

getMaxR(double) - Method in class edu.davidson.chm.waveFunction.Orbital_2px

getMaxR(double) - Method in class edu.davidson.chm.waveFunction.Orbital_2py

getMaxR(double) - Method in class edu.davidson.chm.waveFunction.Orbital_3dx2_y2

getMaxR(double) - Method in class edu.davidson.chm.waveFunction.Orbital_3dxy

getMaxR(double) - Method in class edu.davidson.chm.waveFunction.Orbital_3dxz

getMaxR(double) - Method in class edu.davidson.chm.waveFunction.Orbital_3dyz

getMaxR(double) - Method in class edu.davidson.chm.waveFunction.Orbital_3px

getMaxR(double) - Method in class edu.davidson.chm.waveFunction.Orbital_3py

getMaxR(double) - Method in class edu.davidson.chm.waveFunction.Orbital_4dx2_y2

getMaxR(double) - Method in class edu.davidson.chm.waveFunction.Orbital_4dxy

getMaxR(double) - Method in class edu.davidson.chm.waveFunction.Orbital_4dxz

getMaxR(double) - Method in class edu.davidson.chm.waveFunction.Orbital_4dyz

getMaxR(double) - Method in class edu.davidson.chm.waveFunction.Orbital_4f5xz2_xr2

getMaxR(double) - Method in class edu.davidson.chm.waveFunction.Orbital_4f5yz2_yr2

getMaxR(double) - Method in class edu.davidson.chm.waveFunction.Orbital_4f5z3_3zr2

getMaxR(double) - Method in class edu.davidson.chm.waveFunction.Orbital_4fx3_3xy2

getMaxR(double) - Method in class edu.davidson.chm.waveFunction.Orbital_4fxyz

getMaxR(double) - Method in class edu.davidson.chm.waveFunction.Orbital_4fy3_3yx2

getMaxR(double) - Method in class edu.davidson.chm.waveFunction.Orbital_4fzx2_zy2

getMaxR(double) - Method in class edu.davidson.chm.waveFunction.Orbital_4px

getMaxR(double) - Method in class edu.davidson.chm.waveFunction.Orbital_4py

getMaxR(double) - Method in class edu.davidson.chm.waveFunction.Orbital_d2sp3

getMaxR(double) - Method in class edu.davidson.chm.waveFunction.Orbital_dsp2

getMaxR(double) - Method in class edu.davidson.chm.waveFunction.Orbital_dsp3ax

getMaxR(double) - Method in class edu.davidson.chm.waveFunction.Orbital_dsp3eq

getMaxR(double) - Method in class edu.davidson.chm.waveFunction.Orbital_sp

getMaxR(double) - Method in class edu.davidson.chm.waveFunction.Orbital_sp2

getMaxR(double) - Method in class edu.davidson.chm.waveFunction.Orbital_sp3

getMaxR(double) - Method in class edu.davidson.chm.waveFunction.WaveFunction

Returns the maximum displacement from the nucleus at which the wave function has a value characterized by _fraction.

getMaxR() - Method in class electronDensity.ElectronDensity

Returns the current maximum displacement (in units of Zr/a)

getMaxTemperature() - Method in class calorimeter.Calorimeter

Gets the maximum temperature likely to be returned during a simulation.

getMaxVolume() - Method in class manometer.Manometer

Returns the volume of the left tube, excluding the base of the manometer.

getMessages() - Method in class chemEquilibria.ChemEquilibria

Returns an array of strings containing messages from the last analysis of the chemical system using the parse method.

getMessages() - Method in class edu.davidson.chm.equilibria.Equilibria

Returns the last set of messages generated by the parse method.

getMinTemperature() - Method in class calorimeter.Calorimeter

Gets the minimum temperature likely to be returned during a simulation.

getMinValue() - Method in class chemEquilibria.ChemEquilibria

Returns the minimum positive value for the moles of any species.

getMinValue() - Method in class edu.davidson.chm.equilibria.Equilibria

Returns the minimum positive value for the moles of any species.

getMoles(String, String) - Method in class chemEquilibria.ChemEquilibria

Returns the actual moles of ChemSpecies in the Phase.

getMoles() - Method in class edu.davidson.chm.equilibria.Phase

Returns the total moles of species in the phase

getMoles() - Method in class edu.davidson.chm.equilibria.Species

Returns the moles of the species.

getN() - Method in class edu.davidson.chm.waveFunction.HydrogenicWaveFunction

Returns the principal quantum number

getName() - Method in class showIsosurface.Atom

Provides the name of the atom

getNbrAtoms() - Method in class showMol.Molecule

Provides the number of atoms in the molecule.

getNbrAtoms() - Method in class showStructure.AtomGroup

getNbrCoordinates() - Method in class showIsosurface.Isosurface

Provides the number of coordinates in the geometry array.

getNbrIndices() - Method in class showIsosurface.Isosurface

Provides the number of coordinate indices in the geometry array.

getNbrMassBalance() - Method in class chemEquilibria.ChemEquilibria

Returns the number of mass balance equations for the system

getNbrMassBalance() - Method in class edu.davidson.chm.equilibria.Equilibria

Returns the number of mass balance equations for the system

getNbrParseMessages() - Method in class chemEquilibria.ChemEquilibria

Returns the number of messages from the last parse operation

getNbrPhases() - Method in class edu.davidson.chm.equilibria.ChemSystem

Returns the number of Phases in the Chemical System

getNbrPoints() - Method in class chemEquilibria.ChemEquilibria

Returns the number of points in the calculated titration curve

getNbrReactions() - Method in class edu.davidson.chm.equilibria.ChemSystem

Returns the number of Reactions in the Chemical System

getNbrSpecies() - Method in class edu.davidson.chm.equilibria.Phase

Returns the number of species in the phase

getNbrSpecies() - Method in class edu.davidson.chm.equilibria.Reaction

Returns the number of different species in the reaction

getNumberPoints(int) - Method in class data.Data

Gets number of points in a set

getNumberPoints() - Method in class data.DataSet

Gets the number of points in the data set

getOrbital(int) - Method in class showIsosurface.Atom

Provides the indicated Orbital object

getOrbitalName() - Method in class showIsosurface.Orbital

Returns the name of the orbital

getOwner() - Method in class balance.Balance

Gets the owner of this DataListener

getOwner() - Method in class calorimeter.Calorimeter

Gets the owner of the data source.

getOwner() - Method in class data.Data

SDataListener Method: Returns the owner of this SDataListener

getOwner() - Method in class manometer.Manometer

Gets the owner of this DataListener and DataSource

getOwner() - Method in class piston.Piston

Gets the owner of this DataListener and DataSource

getOwner() - Method in class piston3.Piston3

Gets the owner of this DataListener and DataSource

getOwner() - Method in class spectrophotometer.Spectrophotometer

Gets the owner of the data source.

getOwner() - Method in class stoppedFlow.StoppedFlow

Gets the owner of the data source.

getOwner() - Method in class thermometer.Thermometer

Gets the owner of this DataListener and DataSource

getPar(int) - Method in class chemEquilibria.ChemEquilibria

Returns the parameter with index _idx.

getPar() - Method in class edu.davidson.chm.equilibria.Titration

Returns an array containing the current values of the parameters from the last execution of the fit method.

getParameter(String, String) - Method in class balance.Balance

getParameter(String, String) - Method in class bulb.Bulb

getParameter(String, String) - Method in class bulbs.Bulbs

getParameter(String, String) - Method in class calorimeter.Calorimeter

getParameter(String, String) - Method in class chemEquilibria.ChemEquilibria

getParameter(String, String) - Method in class data.Data

getParameter(String, String) - Method in class electronDensity.ElectronDensity

getParameter(String, String) - Method in class manometer.Manometer

getParameter(String, String) - Method in class piston.Piston

getParameter(String, String) - Method in class piston3.Piston3

getParameter(String, String) - Method in class showHybrid.ShowHybrid

getParameter(String, String) - Method in class showIsosurface.ShowIsosurface

getParameter(String, String) - Method in class showMol.ShowMol

getParameter(String, String) - Method in class showStructure.ShowStructure

getParameter(String, String) - Method in class spectrophotometer.Spectrophotometer

getParameter(String, String) - Method in class stoppedFlow.StoppedFlow

getParameter(String, String) - Method in class thermometer.Thermometer

getParameterInfo() - Method in class balance.Balance

getParameterInfo() - Method in class bulb.Bulb

getParameterInfo() - Method in class bulbs.Bulbs

getParameterInfo() - Method in class calorimeter.Calorimeter

getParameterInfo() - Method in class chemEquilibria.ChemEquilibria

getParameterInfo() - Method in class data.Data

getParameterInfo() - Method in class electronDensity.ElectronDensity

getParameterInfo() - Method in class manometer.Manometer

getParameterInfo() - Method in class piston.Piston

getParameterInfo() - Method in class piston3.Piston3

getParameterInfo() - Method in class showHybrid.ShowHybrid

getParameterInfo() - Method in class showIsosurface.ShowIsosurface

getParameterInfo() - Method in class showMol.ShowMol

getParameterInfo() - Method in class showStructure.ShowStructure

getParameterInfo() - Method in class spectrophotometer.Spectrophotometer

getParameterInfo() - Method in class stoppedFlow.StoppedFlow

getParameterInfo() - Method in class thermometer.Thermometer

getParseMessage(int) - Method in class chemEquilibria.ChemEquilibria

Returns message _n from the last analysis of the chemical system using the parse method.

getParStd(int) - Method in class chemEquilibria.ChemEquilibria

Returns the standard deviation of parameter with index _idx.

getParStd() - Method in class edu.davidson.chm.equilibria.Titration

Returns an array containing the standard deviations of the parameters from the last execution of the fit method.

getpH(String) - Method in class chemEquilibria.ChemEquilibria

Returns the pH of the phase.

getpH() - Method in class edu.davidson.chm.equilibria.Phase

Returns the pH of the phase.

getpH() - Method in class edu.davidson.chm.equilibria.Solution

Returns the pH value for a protic solution.

getPhase(int) - Method in class edu.davidson.chm.equilibria.ChemSystem

Returns the phase at the requested index

getPhase(String) - Method in class edu.davidson.chm.equilibria.ChemSystem

Returns the phase with the given label

getPhase() - Method in class edu.davidson.chm.equilibria.HalfReaction

Returns the phase of the electrode

getPhase() - Method in class edu.davidson.chm.equilibria.Reaction

Returns the phase in which the reaction occurs.

getPhase() - Method in class edu.davidson.chm.equilibria.Species

Returns the phase in which the species exists

getPhases() - Method in class edu.davidson.chm.equilibria.ChemSystem

Returns an array of phases in the system

getPhysicalState() - Method in class edu.davidson.chm.equilibria.Phase

Returns the physical state of the phase.

getPhysicalState() - Method in class edu.davidson.chm.equilibria.Species

Returns the physical state of the species.

getpK(String) - Method in class chemEquilibria.ChemEquilibria

Returns pK for the reaction at the reference temperature

getpK(String, double) - Method in class chemEquilibria.ChemEquilibria

Returns pK for the reaction at the indicated temperature

getpK() - Method in class edu.davidson.chm.equilibria.Reaction

Returns pK for the reaction at the reference temperature

getpK(double) - Method in class edu.davidson.chm.equilibria.Reaction

Returns pK for the reaction at _temperature

getpOH(String) - Method in class chemEquilibria.ChemEquilibria

Returns the pOH of the phase.

getpOH() - Method in class edu.davidson.chm.equilibria.Phase

Returns the pOH of the phase.

getpOH() - Method in class edu.davidson.chm.equilibria.Solution

Returns the pOH value for a protic solution.

getPointTranslation(int) - Method in class showStructure.UnitCell

Returns the virtual world translation of the specified point.

getPotential(String) - Method in class chemEquilibria.ChemEquilibria

Returns the potential in volts for the indicated electrode.

getPotential(String, String) - Method in class chemEquilibria.ChemEquilibria

Returns the potential in volts for the indicated cell.

getPotential(Phase) - Method in class edu.davidson.chm.equilibria.ChemSystem

Returns the half-cell potential in volts for the indicated electrode at the system temperature.

getPotential(String) - Method in class edu.davidson.chm.equilibria.ChemSystem

Returns the half-cell potential in volts for the indicated electrode at the system temperature.

getPotential(Phase, Phase) - Method in class edu.davidson.chm.equilibria.ChemSystem

Returns the cell potential (potential of electrode1 minus that of electrode2) in volts at the system temperature.

getPotential(String, String) - Method in class edu.davidson.chm.equilibria.ChemSystem

Returns the cell potential (potential of electrode1 minus that of electrode2) in volts at the system temperature.

getPotential() - Method in class edu.davidson.chm.equilibria.HalfReaction

Returns the potential in volts for the half-reaction using the current activities of the reactants and products.

getPressure(String) - Method in class chemEquilibria.ChemEquilibria

Returns the pressure (in atm) of the Phase.

getPressure(String, String) - Method in class chemEquilibria.ChemEquilibria

Returns the partial pressure (in atm) of the ChemSpecies in the Phase.

getPressure() - Method in class edu.davidson.chm.equilibria.ChemSystem

Returns the system pressure in atmospheres

getPressure() - Method in class edu.davidson.chm.equilibria.Gas

Returns the pressure of the gas.

getPressure(double, double) - Method in class edu.davidson.chm.equilibria.Gas

Returns the pressure of a gas containing the indicated number of moles and the volume of the gas.

getPressure() - Method in class edu.davidson.chm.equilibria.Liquid

Returns the pressure of the liquid, which is the same as the system pressure.

getPressure() - Method in class edu.davidson.chm.equilibria.Phase

Returns the pressure of the phase.

getPressure(double, double) - Method in class edu.davidson.chm.equilibria.Phase

Returns the pressure of the phase for the specified number of moles and the indicated volume (in Liters).

getPressure() - Method in class edu.davidson.chm.equilibria.Solid

Returns the pressure of the solid, which is the same as the system pressure.

getPressure() - Method in class edu.davidson.chm.equilibria.Solution

Returns the pressure of the solution, which is the same as the system pressure.

getPressure() - Method in class edu.davidson.chm.equilibria.Species

Returns the partial pressure of the species in atmospheres.

getPressure() - Method in class manometer.Manometer

Returns the pressure in torr

getRadial(double) - Method in class edu.davidson.chm.waveFunction.HydrogenicWaveFunction

Returns the value of the radial component of the wave function for a given displacement x.

getReaction(int) - Method in class edu.davidson.chm.equilibria.ChemSystem

Returns the reaction at the requested index

getReaction(String) - Method in class edu.davidson.chm.equilibria.ChemSystem

Returns the reaction with the indicated label

getReactions() - Method in class edu.davidson.chm.equilibria.ChemSystem

Returns an array of the reactions in the system

getReferenceTemperature() - Method in class edu.davidson.chm.equilibria.HalfReaction

Returns the reference temperature for the standard potential

getReferenceTemperature() - Method in class edu.davidson.chm.equilibria.Reaction

Returns the reference temperature for the equilibrium constant

getRightHeight() - Method in class manometer.Manometer

Returns the height of the right (open side) column of mercury in millimeters.

getRightVolume() - Method in class bulbs.Bulbs

Returns the volume of the right bulb in liters

getRotation() - Method in class showHybrid.ShowHybrid

Provides the current setting for the system TransformGroup.

getRotation() - Method in class showIsosurface.ShowIsosurface

Provides the current setting for the system TransformGroup.

getRotationAngle() - Method in class electronDensity.ElectronDensity

Returns angle of rotation

getRotationAngle() - Method in class showHybrid.ShowHybrid

Returns the x component of the axis of rotation for the current transform

getRotationAngle() - Method in class showIsosurface.ShowIsosurface

Returns the x component of the axis of rotation for the current transform

getRotationX() - Method in class electronDensity.ElectronDensity

Returns the x coordinate for the axis of rotation.

getRotationX() - Method in class showHybrid.ShowHybrid

Returns the x component of the axis of rotation for the current transform

getRotationX() - Method in class showIsosurface.ShowIsosurface

Returns the x component of the axis of rotation for the current transform

getRotationY() - Method in class electronDensity.ElectronDensity

Returns the y coordinate for the axis of rotation.

getRotationY() - Method in class showHybrid.ShowHybrid

Returns the y component of the axis of rotation for the current transform

getRotationY() - Method in class showIsosurface.ShowIsosurface

Returns the y component of the axis of rotation for the current transform

getRotationZ() - Method in class electronDensity.ElectronDensity

Returns the z coordinate for the axis of rotation.

getRotationZ() - Method in class showHybrid.ShowHybrid

Returns the z component of the axis of rotation for the current transform

getRotationZ() - Method in class showIsosurface.ShowIsosurface

Returns the z component of the axis of rotation for the current transform

getScaleMaximum() - Method in class manometer.Manometer

Returns the maximum height of the scale (at the last major tick mark) in millimeters.

getSegmentTransform3D(int) - Method in class showStructure.SegmentGroup

getSegmentTransformGroup(int) - Method in class showStructure.SegmentGroup

getShape3D() - Method in class showIsosurface.Isosurface

Provides the Shape3D object for the isosurface

getShape3D() - Method in class showMol.Wire

Provides the Shape3D object for the wire frame.

getSolvent() - Method in class edu.davidson.chm.equilibria.Gas

Returns null, because this phase has no solvent

getSolvent() - Method in class edu.davidson.chm.equilibria.Liquid

Returns null, because this phase has no solvent

getSolvent() - Method in class edu.davidson.chm.equilibria.Phase

Returns the solvent species of a solution.

getSolvent() - Method in class edu.davidson.chm.equilibria.Solid

Returns null, because this phase has no solvent

getSolvent() - Method in class edu.davidson.chm.equilibria.Solution

Returns the solvent species of a solution.

getSpaceFillingTransformGroup() - Method in class showMol.Atom

Provides the TransformGroup for the Space Filling representation of the atom.

getSpecies() - Method in class edu.davidson.chm.equilibria.ChemSystem

Returns an array of species in the system

getSpecies(String) - Method in class edu.davidson.chm.equilibria.ChemSystem

Returns the species in the system with the given label.

getSpecies(String, String) - Method in class edu.davidson.chm.equilibria.ChemSystem

Returns the species in the system and in the indicated phase with the given label.

getSpecies() - Method in class edu.davidson.chm.equilibria.HalfReaction

Returns an array of the species involved in the reaction

getSpecies(String) - Method in class edu.davidson.chm.equilibria.Phase

Returns the species with the given label; returns null if the species does not exist.

getSpecies(ChemSpecies) - Method in class edu.davidson.chm.equilibria.Phase

Returns the Species with the given ChemSpecies.

getSpecies() - Method in class edu.davidson.chm.equilibria.Phase

Returns an array of species in the system

getSpecies() - Method in class edu.davidson.chm.equilibria.Reaction

Returns an array of the species involved in the reaction

getSpeciesAt(int) - Method in class edu.davidson.chm.equilibria.Phase

Returns species at given index

getStandardPotential(String, double) - Method in class chemEquilibria.ChemEquilibria

Returns the standard potential for the half-reaction at the indicated temperature

getStandardPotential() - Method in class edu.davidson.chm.equilibria.HalfReaction

Returns the standard potential in volts for the half-reaction at the reference potential

getStandardPotential(double) - Method in class edu.davidson.chm.equilibria.HalfReaction

Returns the standard potential in volts for the half-reaction at the indicated temperature

getSwitch() - Method in class showHybrid.OrbitalSet

Returns the Switch group for this orbital set.

getSymbol() - Method in class showMol.Atom

Provides the atomic symbol for this atom

getTemperature() - Method in class calorimeter.Calorimeter

Gets the current temperature, which includes noise.

getTemperature(double) - Method in class calorimeter.Calorimeter

Gets the temperature at a specific time in the simulation.

getTemperature() - Method in class chemEquilibria.ChemEquilibria

Returns the absolute temperature of the system.

getTemperature() - Method in class edu.davidson.chm.equilibria.ChemSystem

Returns the system temperature in Kelvin

getTemperature() - Method in class thermometer.Thermometer

Gets the current temperature.

getTemperatureDependence() - Method in class edu.davidson.chm.equilibria.HalfReaction

Returns an array containing the parameters a, b, and c characterizing the temperature dependence of the HalfReaction

getTemperatureDependence() - Method in class edu.davidson.chm.equilibria.Reaction

Returns an array containing the parameters a and b characterizing the temperature dependence of the Reaction

getTime() - Method in class spectrophotometer.Spectrophotometer

Gets the current timer time.

getTitrationValue(int) - Method in class chemEquilibria.ChemEquilibria

Gets the pX or E value in a calculated titration curve

getTolerance() - Method in class edu.davidson.chm.equilibria.Equilibria

Returns the tolerance for convergence of variables

getTransform3D() - Method in class showIsosurface.Atom

Method for obtaining the atom's TransformGroup transform

getTransformGroup() - Method in class showIsosurface.Atom

Method for obtaining the atom's TransformGroup

getTransformGroup() - Method in class showMol.Bond

Provides the TransformGroup for the bond.

getValue(double, double, double) - Method in class edu.davidson.chm.waveFunction.Gaussian

Returns the value of the basis function at r, theta, phi.

getValue(double, double, double) - Method in class edu.davidson.chm.waveFunction.HybridWaveFunction

Returns the value of the hybrid wave function at r, theta, phi

getValue(double, double, double) - Method in class edu.davidson.chm.waveFunction.HydrogenicWaveFunction

Returns a two-dimensional array containing the real and imaginary components of the wave function at a normalized displacement x and angles theta and phi.

getValue(double, double, double) - Method in class edu.davidson.chm.waveFunction.Orbital_2px

getValue(double, double, double) - Method in class edu.davidson.chm.waveFunction.Orbital_2py

getValue(double, double, double) - Method in class edu.davidson.chm.waveFunction.Orbital_3dx2_y2

getValue(double, double, double) - Method in class edu.davidson.chm.waveFunction.Orbital_3dxy

getValue(double, double, double) - Method in class edu.davidson.chm.waveFunction.Orbital_3dxz

getValue(double, double, double) - Method in class edu.davidson.chm.waveFunction.Orbital_3dyz

getValue(double, double, double) - Method in class edu.davidson.chm.waveFunction.Orbital_3px

getValue(double, double, double) - Method in class edu.davidson.chm.waveFunction.Orbital_3py

getValue(double, double, double) - Method in class edu.davidson.chm.waveFunction.Orbital_4dx2_y2

getValue(double, double, double) - Method in class edu.davidson.chm.waveFunction.Orbital_4dxy

getValue(double, double, double) - Method in class edu.davidson.chm.waveFunction.Orbital_4dxz

getValue(double, double, double) - Method in class edu.davidson.chm.waveFunction.Orbital_4dyz

getValue(double, double, double) - Method in class edu.davidson.chm.waveFunction.Orbital_4f5xz2_xr2

getValue(double, double, double) - Method in class edu.davidson.chm.waveFunction.Orbital_4f5yz2_yr2

getValue(double, double, double) - Method in class edu.davidson.chm.waveFunction.Orbital_4f5z3_3zr2

getValue(double, double, double) - Method in class edu.davidson.chm.waveFunction.Orbital_4fx3_3xy2

getValue(double, double, double) - Method in class edu.davidson.chm.waveFunction.Orbital_4fxyz

getValue(double, double, double) - Method in class edu.davidson.chm.waveFunction.Orbital_4fy3_3yx2

getValue(double, double, double) - Method in class edu.davidson.chm.waveFunction.Orbital_4fzx2_zy2

getValue(double, double, double) - Method in class edu.davidson.chm.waveFunction.Orbital_4px

getValue(double, double, double) - Method in class edu.davidson.chm.waveFunction.Orbital_4py

getValue(double, double, double) - Method in class edu.davidson.chm.waveFunction.Orbital_d2sp3

getValue(double, double, double) - Method in class edu.davidson.chm.waveFunction.Orbital_dsp2

getValue(double, double, double) - Method in class edu.davidson.chm.waveFunction.Orbital_dsp3ax

getValue(double, double, double) - Method in class edu.davidson.chm.waveFunction.Orbital_dsp3eq

getValue(double, double, double) - Method in class edu.davidson.chm.waveFunction.Orbital_sp

getValue(double, double, double) - Method in class edu.davidson.chm.waveFunction.Orbital_sp2

getValue(double, double, double) - Method in class edu.davidson.chm.waveFunction.Orbital_sp3

getValue(double, double, double) - Method in class edu.davidson.chm.waveFunction.WaveFunction

Returns the value of the wave function for a set of spherical coordinates _r (normalized distance from the nucleus), _theta (angle from the z axis), and _phi (angle from the x axis in the xy plane).

getValueXYZ(double, double, double) - Method in class edu.davidson.chm.waveFunction.Gaussian

Returns the value of the basis function at r, theta, phi.

getValueXYZ(double, double, double) - Method in class edu.davidson.chm.waveFunction.HybridWaveFunction

Returns the value of the wave function at the cartesian coordiantes

getValueXYZ(double, double, double) - Method in class edu.davidson.chm.waveFunction.HydrogenicWaveFunction

Returns the value of the wave function at the cartesian coordiantes

getValueXYZ(double, double, double) - Method in class edu.davidson.chm.waveFunction.Orbital_2px

getValueXYZ(double, double, double) - Method in class edu.davidson.chm.waveFunction.Orbital_2py

getValueXYZ(double, double, double) - Method in class edu.davidson.chm.waveFunction.Orbital_3dx2_y2

getValueXYZ(double, double, double) - Method in class edu.davidson.chm.waveFunction.Orbital_3dxy

getValueXYZ(double, double, double) - Method in class edu.davidson.chm.waveFunction.Orbital_3dxz

getValueXYZ(double, double, double) - Method in class edu.davidson.chm.waveFunction.Orbital_3dyz

getValueXYZ(double, double, double) - Method in class edu.davidson.chm.waveFunction.Orbital_3px

getValueXYZ(double, double, double) - Method in class edu.davidson.chm.waveFunction.Orbital_3py

getValueXYZ(double, double, double) - Method in class edu.davidson.chm.waveFunction.Orbital_4dx2_y2

getValueXYZ(double, double, double) - Method in class edu.davidson.chm.waveFunction.Orbital_4dxy

getValueXYZ(double, double, double) - Method in class edu.davidson.chm.waveFunction.Orbital_4dxz

getValueXYZ(double, double, double) - Method in class edu.davidson.chm.waveFunction.Orbital_4dyz

getValueXYZ(double, double, double) - Method in class edu.davidson.chm.waveFunction.Orbital_4f5xz2_xr2

getValueXYZ(double, double, double) - Method in class edu.davidson.chm.waveFunction.Orbital_4f5yz2_yr2

getValueXYZ(double, double, double) - Method in class edu.davidson.chm.waveFunction.Orbital_4f5z3_3zr2

getValueXYZ(double, double, double) - Method in class edu.davidson.chm.waveFunction.Orbital_4fx3_3xy2

getValueXYZ(double, double, double) - Method in class edu.davidson.chm.waveFunction.Orbital_4fxyz

getValueXYZ(double, double, double) - Method in class edu.davidson.chm.waveFunction.Orbital_4fy3_3yx2

getValueXYZ(double, double, double) - Method in class edu.davidson.chm.waveFunction.Orbital_4fzx2_zy2

getValueXYZ(double, double, double) - Method in class edu.davidson.chm.waveFunction.Orbital_4px

getValueXYZ(double, double, double) - Method in class edu.davidson.chm.waveFunction.Orbital_4py

getValueXYZ(double, double, double) - Method in class edu.davidson.chm.waveFunction.Orbital_d2sp3

getValueXYZ(double, double, double) - Method in class edu.davidson.chm.waveFunction.Orbital_dsp2

getValueXYZ(double, double, double) - Method in class edu.davidson.chm.waveFunction.Orbital_dsp3ax

getValueXYZ(double, double, double) - Method in class edu.davidson.chm.waveFunction.Orbital_dsp3eq

getValueXYZ(double, double, double) - Method in class edu.davidson.chm.waveFunction.Orbital_sp

getValueXYZ(double, double, double) - Method in class edu.davidson.chm.waveFunction.Orbital_sp2

getValueXYZ(double, double, double) - Method in class edu.davidson.chm.waveFunction.Orbital_sp3

getValueXYZ(double, double, double) - Method in class edu.davidson.chm.waveFunction.WaveFunction

Returns the value of the wave function for a set of cartesian coordinates.

getVariables() - Method in class calorimeter.Calorimeter

Gets the values of the variables for the data source.

getVariables() - Method in class manometer.Manometer

SDataSource method returning the current variables.

getVariables() - Method in class piston.Piston

SDataSource method returning the current variables.

getVariables() - Method in class piston3.Piston3

SDataSource method returning the current variables.

getVariables() - Method in class spectrophotometer.Spectrophotometer

Gets the values of the variables for SDataSource.
element [0][0] is the time as provided by the timer, which might be disabled
element [0][1] is the number of photons emitted by the light source
element [0][2] is the number of photons detected by the detector
element [0][3] is the intensity (photons/sec), which is zero if the timer is off
element [0][4] is the transmittance, which is zero if the timer is off
element [0][5] is the absorbance, which is zero if the timer is off
The transmittance and absorbance are determined using the reference intensity, if it is defined; otherwise the source intensity is used.

getVariables() - Method in class stoppedFlow.StoppedFlow

Gets the values of the variables for SDataSource.
element [0][0] is the time as provided by the timer, which might be disabled
element [0][1] is the number of photons emitted by the light source
element [0][2] is the number of photons detected by the detector
element [0][3] is the intensity (photons/sec), which is zero if the timer is off
element [0][4] is the transmittance, which is zero if the timer is off
element [0][5] is the absorbance, which is zero if the timer is off
The transmittance and absorbance are determined using the reference intensity, if it is defined; otherwise the source intensity is used.

getVariables() - Method in class thermometer.Thermometer

SDataSource method.

getVarStrings() - Method in class calorimeter.Calorimeter

Gets the variable strings that the data source supplied.

getVarStrings() - Method in class manometer.Manometer

SDataSource method returning variable strings.

getVarStrings() - Method in class piston.Piston

SDataSource method returning variable strings.

getVarStrings() - Method in class piston3.Piston3

SDataSource method returning variable strings.

getVarStrings() - Method in class spectrophotometer.Spectrophotometer

Returns an array of the variable names supplied by this SDataSource.
t is the simulation time in seconds
s is the number of photons emitted by the source
d is the number of photons that have reached the detector
I is the measured photon intensity
T is the measured transmittance
A is the measured absorbance

getVarStrings() - Method in class stoppedFlow.StoppedFlow

Returns an array of the variable names supplied by this SDataSource.
t is the simulation time in seconds
A is the absorbance
C0 through C7 are concentrations of species 0 through 7

getVarStrings() - Method in class thermometer.Thermometer

SDataSource method.

getVolume() - Method in class bulbs.Bulbs

Returns the volume of the two bulbs in liters.

getVolume(String) - Method in class chemEquilibria.ChemEquilibria

Returns the actual volume (in liters) of the phase.

getVolume() - Method in class edu.davidson.chm.equilibria.Gas

Returns the volume of the gas.

getVolume() - Method in class edu.davidson.chm.equilibria.Liquid

Returns the volume of the phase in liters

getVolume() - Method in class edu.davidson.chm.equilibria.Phase

Returns the volume of the phase in liters

getVolume() - Method in class edu.davidson.chm.equilibria.Solid

Returns the volume of the phase in liters

getVolume() - Method in class edu.davidson.chm.equilibria.Solution

Returns the volume of the phase in liters

getVolume() - Method in class manometer.Manometer

Returns the volume of the sealed tube above the liquid.

getVolume() - Method in class piston.Piston

Returns the volume of the piston

getVolume() - Method in class piston3.Piston3

Returns the volume (in mL) of the piston

getVolume(int) - Method in class piston3.Piston3

Returns the volume (in mL) of the region (1, 2, or 3).

getVolumes() - Method in class piston3.Piston3

Returns an array containing the volumes (in mL) of regions 1, 2, and 3.

getVolumeTitrant(int) - Method in class chemEquilibria.ChemEquilibria

Gets the volume (in mL) of titrant added in a calculated titration curve

getWater() - Method in class edu.davidson.chm.equilibria.ChemSystem

Returns the Water chemical species for this chemical system

getWires() - Method in class showMol.MoleculeLoader

Provides an array containing the Wire objects for this molecule.

getXFactor() - Method in class showHybrid.MouseRot

Return the x-axis movement multipler.

getYFactor() - Method in class showHybrid.MouseRot

Return the y-axis movement multipler.