A B C D E F G H I K L M N O P Q R S T U V W X Y Z

G

gamma - Variable in class showStructure.UnitCell
 
Gas - Class in edu.davidson.chm.equilibria
This project contains the files necessary to solve arbitrary equilibrium problems
Gas() - Constructor for class edu.davidson.chm.equilibria.Gas
 
Gas(String, ChemSystem) - Constructor for class edu.davidson.chm.equilibria.Gas
The minimal requirements for defining a Gas phase are a descriptive label and the chemical system that contains the phase.
Gaussian - Class in edu.davidson.chm.waveFunction
Defines a Gaussian Basis Function
Gaussian() - Constructor for class edu.davidson.chm.waveFunction.Gaussian
 
Gaussian(int, String) - Constructor for class edu.davidson.chm.waveFunction.Gaussian
Creates a basis function that contains nbr gaussian functions
Gaussian(int, String, double, double, double) - Constructor for class edu.davidson.chm.waveFunction.Gaussian
Creates a basis function that contains nbr gaussian functions and defines the first gaussian function.
getAbsorbance(double[]) - Method in class stoppedFlow.StoppedFlow
Returns the absorbance for a set of molar concentrations.
getAbsorbanceDataSet() - Method in class stoppedFlow.StoppedFlow
Returns the absorbance data set from the last simulation.
getAbsorbanceDataSet(int) - Method in class stoppedFlow.StoppedFlow
Returns the absorbance at index _i.
getAcid() - Method in class edu.davidson.chm.equilibria.Gas
Returns null, because there is no solvent or conjugate acid in this type of phase.
getAcid() - Method in class edu.davidson.chm.equilibria.Liquid
Returns null, because there is no solvent or conjugate acid in this type of phase.
getAcid() - Method in class edu.davidson.chm.equilibria.Phase
Returns the conjugate acid of the solvent for a solution with a protic solvent.
getAcid() - Method in class edu.davidson.chm.equilibria.Solid
Returns null, because there is no solvent or conjugate acid in this type of phase.
getAcid() - Method in class edu.davidson.chm.equilibria.Solution
Returns the conjugate acid of the solvent for a solution with a protic solvent.
getActivity(String, String) - Method in class chemEquilibria.ChemEquilibria
Returns the activity of the ChemSpecies in the Phase.
getActivity() - Method in class edu.davidson.chm.equilibria.Species
Returns the activity of the species.
getActivityCoefficient() - Method in class edu.davidson.chm.equilibria.Species
Returns the activity coefficient for the species.
getAlpha() - Method in class showStructure.UnitCell
 
getAnalConc(String, String) - Method in class chemEquilibria.ChemEquilibria
Returns the analytical molar concentration of the ChemSpecies in the Phase.
getAnalConc() - Method in class edu.davidson.chm.equilibria.Species
Returns the analytical concentration (mole/L)
getAnalMass() - Method in class edu.davidson.chm.equilibria.Species
Returns the analytical mass in grams
getAnalMoles(String, String) - Method in class chemEquilibria.ChemEquilibria
Returns the analytical moles of the ChemSpecies in the Phase.
getAnalMoles() - Method in class edu.davidson.chm.equilibria.Species
Returns the analytical number of moles
getAnalPressure() - Method in class edu.davidson.chm.equilibria.Species
Returns the analytical partial pressure.
getAngular(double, double) - Method in class edu.davidson.chm.waveFunction.HydrogenicWaveFunction
Returns the value of the angular component of the wave function for a given set of angles theta and phi.
getAnionCounterion() - Method in class edu.davidson.chm.equilibria.ChemSystem
Returns the generic X- ChemSpecies, which is used to arbitrarily balance charge.
getAppletInfo() - Method in class balance.Balance
 
getAppletInfo() - Method in class bulb.Bulb
 
getAppletInfo() - Method in class bulbs.Bulbs
 
getAppletInfo() - Method in class calorimeter.Calorimeter
 
getAppletInfo() - Method in class chemEquilibria.ChemEquilibria
 
getAppletInfo() - Method in class data.Data
 
getAppletInfo() - Method in class electronDensity.ElectronDensity
 
getAppletInfo() - Method in class manometer.Manometer
 
getAppletInfo() - Method in class piston.Piston
 
getAppletInfo() - Method in class piston3.Piston3
 
getAppletInfo() - Method in class showHybrid.ShowHybrid
 
getAppletInfo() - Method in class showIsosurface.ShowIsosurface
 
getAppletInfo() - Method in class showMol.ShowMol
 
getAppletInfo() - Method in class showStructure.ShowStructure
 
getAppletInfo() - Method in class spectrophotometer.Spectrophotometer
 
getAppletInfo() - Method in class stoppedFlow.StoppedFlow
 
getAppletInfo() - Method in class thermometer.Thermometer
 
getAtom(int) - Method in class showMol.Molecule
Provides the indicated atom
getAtomGroupTranslation() - Method in class showStructure.ShowStructure
 
getAtomicNumber() - Method in class showMol.Atom
Provides the atomic number of the atom.
getAtoms() - Method in class showMol.MoleculeLoader
Provides an array containing the Atom objects for this molecule.
getAtomTranslation(int) - Method in class showStructure.AtomGroup
Returns virtual world translation of the specified atom.
getAtomVector() - Method in class showMol.MoleculeLoader
Provides a Vector containing the Atom objects
getAutoChargeBalance() - Method in class edu.davidson.chm.equilibria.Phase
Returns the autoChargeBalance property
getAutodissociation() - Method in class edu.davidson.chm.equilibria.Solution
Returns the autodissociation reaction for this solution, if the solvent is protic.
getBallAndStickTransformGroup() - Method in class showMol.Atom
Provides the TransformGroup for the Ball and Stick representation of the atom.
getBase() - Method in class edu.davidson.chm.equilibria.Gas
Returns null, because there is no solvent or conjugate base in this type of phase.
getBase() - Method in class edu.davidson.chm.equilibria.Liquid
Returns null, because there is no solvent or conjugate base in this type of phase.
getBase() - Method in class edu.davidson.chm.equilibria.Phase
Returns the conjugate base of the solvent for a solution with a protic solvent.
getBase() - Method in class edu.davidson.chm.equilibria.Solid
Returns null, because there is no solvent or conjugate base in this type of phase.
getBase() - Method in class edu.davidson.chm.equilibria.Solution
Returns the conjugate base of the solvent for a solution with a protic solvent.
getBeta() - Method in class showStructure.UnitCell
 
getBonds() - Method in class showMol.MoleculeLoader
Provides an array containing the Bond objects for this molecule.
getBranchGroup() - Method in class showHybrid.Arrow
 
getBranchGroup() - Method in class showIsosurface.Orbital
Returns the BranchGroup object for the orbital
getBranchGroup() - Method in class showMol.Molecule
Provides the BranchGroup for the molecule.
getCationCounterion() - Method in class edu.davidson.chm.equilibria.ChemSystem
Returns the generic X+ ChemSpecies, which is used to arbitrarily balance charge.
getCellA() - Method in class showStructure.UnitCell
 
getCellB() - Method in class showStructure.UnitCell
 
getCellC() - Method in class showStructure.UnitCell
 
getCellPts() - Method in class showStructure.UnitCell
 
getCellType() - Method in class showStructure.UnitCell
Cell Types: 1 cubic (simple cubic) 2 body-centered cubic (bcc) 3 face-centered cubic (fcc)
getCenter() - Method in class showMol.Molecule
 
getChar(String, int) - Method in class edu.davidson.chm.equilibria.ChemSystem
Returns a string containing character at position pos
getCharge() - Method in class edu.davidson.chm.equilibria.ChemSpecies
Returns the charge of the ChemicalSpecies.
getCharge() - Method in class edu.davidson.chm.equilibria.Species
Returns the charge on the species.
getChargeBalance(String) - Method in class chemEquilibria.ChemEquilibria
Returns a string representing the charge balance equation for indicated phase.
getChargeBalance(Phase) - Method in class edu.davidson.chm.equilibria.Equilibria
Returns a string representing the charge balance relation for the phase.
getChemSpecies(String) - Method in class chemEquilibria.ChemEquilibria
Returns the ChemSpecies
getChemSpecies() - Method in class edu.davidson.chm.equilibria.Species
Returns the ChemSpecies for this Species.
getChemSystem() - Method in class edu.davidson.chm.equilibria.Phase
Returns the chemical system in which the phase exists
getChemSystem() - Method in class edu.davidson.chm.equilibria.Species
Returns the chemical system in which the species exists
getChildMask() - Method in class showIsosurface.Atom
Returns the ChildMask for the atom SwitchGroup.
getChildMask(int) - Method in class showIsosurface.ShowIsosurface
Returns the Switch child mask for the orbitals on the specified atom
getChildMask(int, int) - Method in class showIsosurface.ShowIsosurface
Returns the Switch child mask setting for a specific orbital.
getChiSq() - Method in class chemEquilibria.ChemEquilibria
Returns the chi-square value for the last curve-fitting procedure.
getChiSq() - Method in class edu.davidson.chm.equilibria.Titration
Returns the chi-squared value
getCoefficient(Species) - Method in class edu.davidson.chm.equilibria.HalfReaction
Returns the stoichiometric coefficient of the given species.
getCoefficient(String) - Method in class edu.davidson.chm.equilibria.HalfReaction
Returns the stoichiometric coefficient of the species with the given label.
getCoefficient(Species) - Method in class edu.davidson.chm.equilibria.Reaction
Returns the stoichiometric coefficient of the given species.
getCoefficient(String) - Method in class edu.davidson.chm.equilibria.Reaction
Returns the stoichiometric coefficient of the species with the given label.
getCoefficients() - Method in class edu.davidson.chm.equilibria.HalfReaction
Returns an array of the stoichiometric coefficients for the species in the reaction
getCoefficients() - Method in class edu.davidson.chm.equilibria.Reaction
Returns an array of the stoichiometric coefficients for the species in the reaction
getColor(double) - Method in class spectrophotometer.Spectrophotometer
Returns the color associated with the specified wavelength.
getColor(int, int, int) - Method in class stoppedFlow.StoppedFlow
Returns the color with the indicated red, green, and blue components.
getColor(double[]) - Method in class stoppedFlow.StoppedFlow
Returns the color for a set of concentrations.
getConc(String, String) - Method in class chemEquilibria.ChemEquilibria
Returns the molar concentration of the ChemSpecies in the Phase.
getConc() - Method in class edu.davidson.chm.equilibria.Species
Returns the molar concentration.
getCovalentRadius() - Method in class showMol.Atom
Provides the covalent radius (in angstroms) for the atom.
getCovariance() - Method in class edu.davidson.chm.equilibria.Titration
Returns the covariance matrix from the last execution of the fit method.
getCPKColor() - Method in class showMol.Atom
Provides the Color3f object for the atom's CPK color.
getData() - Method in class data.DataSet
Gets all data in the set.
getDataSet() - Method in class stoppedFlow.StoppedFlow
Returns the data set from the last simulation.
getDataSet(int) - Method in class stoppedFlow.StoppedFlow
Returns the data set for species _n.
getDataSet(int, int) - Method in class stoppedFlow.StoppedFlow
Returns the concentration of species _n at index _i.
getDatum(int) - Method in class data.DataSet
Gets point pt in the data set
getDensity(String) - Method in class chemEquilibria.ChemEquilibria
Returns the density (in grams/mL) of the Phase.
getDensity() - Method in class edu.davidson.chm.equilibria.Gas
Returns the density of the gas.
getDensity() - Method in class edu.davidson.chm.equilibria.Phase
Returns the density of the phase in grams per milliliter
getDerivative(int) - Method in class chemEquilibria.ChemEquilibria
Returns the derivative of an experimental titration curve at the _n-th point.
getDerivative(int) - Method in class edu.davidson.chm.equilibria.Titration
Returns the derivative of the titration curve at the indicated index.
getDerivative2(int) - Method in class chemEquilibria.ChemEquilibria
Returns the second derivative of an experimental titration curve at the _n-th point.
getDerivative2(int) - Method in class edu.davidson.chm.equilibria.Titration
Returns the second derivative of the titration curve at the indicated index.
getDiameter() - Method in class manometer.Manometer
Returns the diameter of a tube in millimeters
getDielectricConstant() - Method in class edu.davidson.chm.equilibria.Phase
Returns the dielectric constant of the phase
getEDHEa() - Method in class edu.davidson.chm.equilibria.Phase
Returns the Extended Debye-Huckel Equations a parameter, which appears in the numerator of the expression for ln f.
getEDHEb() - Method in class edu.davidson.chm.equilibria.Phase
Returns the Extended Debye-Huckel Equations b parameter in units of 1/angstrom, which appears in the denominator of the expression for ln f.
getEquation() - Method in class edu.davidson.chm.equilibria.HalfReaction
Returns a string representation of the half-reaction.
getEquation() - Method in class edu.davidson.chm.equilibria.Reaction
Returns a string representation of the reaction.
getEquivalents() - Method in class edu.davidson.chm.equilibria.HalfReaction
Returns the number of equivalents (n)
getFractionLiquid() - Method in class manometer.Manometer
Returns the fraction of available tube filled with mercury.
getFW() - Method in class edu.davidson.chm.equilibria.ChemSpecies
Returns the formula weight (g/mole) of the ChemicalSpecies.
getFW() - Method in class edu.davidson.chm.equilibria.Species
Returns the formula weight of the species
getGamma() - Method in class showStructure.UnitCell
 
getGaussian(int) - Method in class electronDensity.ElectronDensity
Returns the gaussian basis function for the given id
getGoodnessOfFit() - Method in class chemEquilibria.ChemEquilibria
Returns the goodness-of-fit for the curve-fitting procedure.
getGoodnessOfFit() - Method in class edu.davidson.chm.equilibria.Titration
Returns the goodness-of-fit
getHalfReaction(String) - Method in class edu.davidson.chm.equilibria.ChemSystem
Returns the half-reaction with the indicated label
getHalfReactionPotential(String) - Method in class chemEquilibria.ChemEquilibria
Returns the potential in volts for the half-reaction.
getHalfReactions() - Method in class edu.davidson.chm.equilibria.ChemSystem
Returns an array of the half-reactions in the system
getHydrogen_Ion() - Method in class edu.davidson.chm.equilibria.ChemSystem
Returns the Hydrogen_Ion ChemSpecies.
getHydroxide_Ion() - Method in class edu.davidson.chm.equilibria.ChemSystem
Returns the Hydroxide_Ion ChemSpecies.
getID() - Method in class edu.davidson.chm.waveFunction.WaveFunction
Returns the id of the wave function
getIndex() - Method in class edu.davidson.chm.equilibria.Reaction
Returns the index of this reactions (used in Equilibria.class)
getIndex() - Method in class edu.davidson.chm.equilibria.Species
Returns the index of this Species (used in Equilibria.class)
getIndexedTriangleArray() - Method in class showIsosurface.Isosurface
Provides the IndexedTriangleArray object for the isosurface
getInfo() - Method in class edu.davidson.chm.equilibria.ChemSystem
Returns information about this class
getInfo() - Method in class edu.davidson.chm.equilibria.Equilibria
Returns information about this class
getInfo() - Method in class edu.davidson.chm.equilibria.Gas
Returns information about this class
getInfo() - Method in class edu.davidson.chm.equilibria.HalfReaction
Returns information about this class
getInfo() - Method in class edu.davidson.chm.equilibria.Liquid
Returns information about this class
getInfo() - Method in class edu.davidson.chm.equilibria.Phase
Returns information about this class
getInfo() - Method in class edu.davidson.chm.equilibria.Reaction
Returns information about this class
getInfo() - Method in class edu.davidson.chm.equilibria.Solid
Returns information about this class
getInfo() - Method in class edu.davidson.chm.equilibria.Solution
Returns information about this class
getInfo() - Method in class edu.davidson.chm.equilibria.Species
Returns information about this class
getInfo() - Method in class edu.davidson.chm.equilibria.Titration
Returns information about this class
getInfo() - Method in class showIsosurface.Atom
Returns name, version, copyright, and author information about this class.
getInfo() - Method in class showIsosurface.Isosurface
Returns name, version, copyright, and author information about this class.
getInfo() - Method in class showIsosurface.Orbital
Returns name, version, copyright, and author information about this class.
getIonicStrength(String) - Method in class chemEquilibria.ChemEquilibria
Returns the ionic strength of the phase in mole/L.
getIonicStrength() - Method in class edu.davidson.chm.equilibria.Gas
Returns zero, because ionic strength has no meaning for this phase
getIonicStrength() - Method in class edu.davidson.chm.equilibria.Liquid
Returns zero, because ionic strength has no meaning for this phase
getIonicStrength() - Method in class edu.davidson.chm.equilibria.Phase
Returns the ionic strength of the phase
getIonicStrength() - Method in class edu.davidson.chm.equilibria.Solid
Returns zero, because ionic strength has no meaning for this phase
getIonicStrength() - Method in class edu.davidson.chm.equilibria.Solution
Returns the ionic strength (mole/L) for the solution.
getIonSize() - Method in class edu.davidson.chm.equilibria.ChemSpecies
Returns the Debye-Huckel ion-size parameter in angstroms.
getIonSize() - Method in class edu.davidson.chm.equilibria.Species
Returns the Debye-Huckel ion size parameter in angstroms
getIsAcid() - Method in class edu.davidson.chm.equilibria.Species
Returns the isAcid property
getIsAnimate() - Method in class showStructure.ShowStructure
 
getIsAuto() - Method in class edu.davidson.chm.equilibria.Reaction
Returns the isAuto property, which indicates whether this reaction is an autodissociation reaction
getIsBase() - Method in class edu.davidson.chm.equilibria.Species
Returns the isBase property
getIsHomogeneous() - Method in class edu.davidson.chm.equilibria.Reaction
Returns the isHomogeneous property, which indicates whether all reactants and products in the reaction exist in the same phase.
getIsIdeal() - Method in class edu.davidson.chm.equilibria.ChemSystem
Returns the isIdeal property.
getIsIsobaric() - Method in class edu.davidson.chm.equilibria.ChemSystem
Returns true if the system is isobaric.
getIsosurface(int) - Method in class showIsosurface.Orbital
Provides the requested Isosurface object
getIsProtic() - Method in class edu.davidson.chm.equilibria.Phase
Returns true if the phase is a solution with a protic solvent
getIsReactive() - Method in class edu.davidson.chm.equilibria.Species
Returns the isReactive status
getIsSolvent() - Method in class edu.davidson.chm.equilibria.Species
Returns the isSolvent status
getIsValid() - Method in class edu.davidson.chm.equilibria.HalfReaction
Returns the isValid property
getIsValid() - Method in class edu.davidson.chm.equilibria.Reaction
Returns the isValid property
getK(String) - Method in class chemEquilibria.ChemEquilibria
Returns the equilibrium constant for the reaction at the reference temperature
getK(String, double) - Method in class chemEquilibria.ChemEquilibria
Returns the equilibrium constant for the reaction at the indicated temperature
getK() - Method in class edu.davidson.chm.equilibria.Reaction
Returns the thermodynamic equilibrium constant at the reference temperature
getK(double) - Method in class edu.davidson.chm.equilibria.Reaction
Returns the equilibrium constant at the indicated temperature.
getL() - Method in class edu.davidson.chm.waveFunction.HydrogenicWaveFunction
Returns the angular momentum quantum number
getLabel() - Method in class edu.davidson.chm.equilibria.ChemSpecies
Returns the descriptive label of the ChemSpecies.
getLabel() - Method in class edu.davidson.chm.equilibria.ChemSystem
Returns the chemical system label
getLabel() - Method in class edu.davidson.chm.equilibria.HalfReaction
Returns the label for the half-reaction
getLabel() - Method in class edu.davidson.chm.equilibria.Phase
Returns the phase label
getLabel() - Method in class edu.davidson.chm.equilibria.Reaction
Returns the label of the reaction
getLabel() - Method in class edu.davidson.chm.equilibria.Species
Returns the phase label
getLeftHeight() - Method in class manometer.Manometer
Returns the height of the left (closed side) column of mercury in millimeters.
getLeftVolume() - Method in class bulbs.Bulbs
Returns the volume of the left bulb in liters
getM() - Method in class edu.davidson.chm.waveFunction.HydrogenicWaveFunction
Returns the magnetic quantum number
getMass(String, String) - Method in class chemEquilibria.ChemEquilibria
Returns the actual mass (in grams) of ChemSpecies in the Phase.
getMass() - Method in class edu.davidson.chm.equilibria.Liquid
Returns the mass in grams of the liquid.
getMass() - Method in class edu.davidson.chm.equilibria.Phase
Returns the total mass of the phase in grams
getMass() - Method in class edu.davidson.chm.equilibria.Solid
Returns the mass in grams of the solid.
getMass() - Method in class edu.davidson.chm.equilibria.Species
Returns the mass in grams
getMassBalance(int) - Method in class chemEquilibria.ChemEquilibria
Returns a string containing the mass balance equation
getMassBalance() - Method in class edu.davidson.chm.equilibria.Equilibria
Returns an array of strings representing the mass balance relations for the chemical system.
getMaxR(double) - Method in class edu.davidson.chm.waveFunction.Gaussian
 
getMaxR(double) - Method in class edu.davidson.chm.waveFunction.HybridWaveFunction
Returns an estimate of the maximum displacement at the point where psi*psi is the indicated fraction of the maximum value of psi*psi.
getMaxR(double) - Method in class edu.davidson.chm.waveFunction.HydrogenicWaveFunction
Returns an estimate of the maximum displacement at the point where psi*psi is the indicated fraction of the maximum value of psi*psi.
getMaxR(double) - Method in class edu.davidson.chm.waveFunction.Orbital_2px
 
getMaxR(double) - Method in class edu.davidson.chm.waveFunction.Orbital_2py
 
getMaxR(double) - Method in class edu.davidson.chm.waveFunction.Orbital_3dx2_y2
 
getMaxR(double) - Method in class edu.davidson.chm.waveFunction.Orbital_3dxy
 
getMaxR(double) - Method in class edu.davidson.chm.waveFunction.Orbital_3dxz
 
getMaxR(double) - Method in class edu.davidson.chm.waveFunction.Orbital_3dyz
 
getMaxR(double) - Method in class edu.davidson.chm.waveFunction.Orbital_3px
 
getMaxR(double) - Method in class edu.davidson.chm.waveFunction.Orbital_3py
 
getMaxR(double) - Method in class edu.davidson.chm.waveFunction.Orbital_4dx2_y2
 
getMaxR(double) - Method in class edu.davidson.chm.waveFunction.Orbital_4dxy
 
getMaxR(double) - Method in class edu.davidson.chm.waveFunction.Orbital_4dxz
 
getMaxR(double) - Method in class edu.davidson.chm.waveFunction.Orbital_4dyz
 
getMaxR(double) - Method in class edu.davidson.chm.waveFunction.Orbital_4f5xz2_xr2
 
getMaxR(double) - Method in class edu.davidson.chm.waveFunction.Orbital_4f5yz2_yr2
 
getMaxR(double) - Method in class edu.davidson.chm.waveFunction.Orbital_4f5z3_3zr2
 
getMaxR(double) - Method in class edu.davidson.chm.waveFunction.Orbital_4fx3_3xy2
 
getMaxR(double) - Method in class edu.davidson.chm.waveFunction.Orbital_4fxyz
 
getMaxR(double) - Method in class edu.davidson.chm.waveFunction.Orbital_4fy3_3yx2
 
getMaxR(double) - Method in class edu.davidson.chm.waveFunction.Orbital_4fzx2_zy2
 
getMaxR(double) - Method in class edu.davidson.chm.waveFunction.Orbital_4px
 
getMaxR(double) - Method in class edu.davidson.chm.waveFunction.Orbital_4py
 
getMaxR(double) - Method in class edu.davidson.chm.waveFunction.Orbital_d2sp3
 
getMaxR(double) - Method in class edu.davidson.chm.waveFunction.Orbital_dsp2
 
getMaxR(double) - Method in class edu.davidson.chm.waveFunction.Orbital_dsp3ax
 
getMaxR(double) - Method in class edu.davidson.chm.waveFunction.Orbital_dsp3eq
 
getMaxR(double) - Method in class edu.davidson.chm.waveFunction.Orbital_sp
 
getMaxR(double) - Method in class edu.davidson.chm.waveFunction.Orbital_sp2
 
getMaxR(double) - Method in class edu.davidson.chm.waveFunction.Orbital_sp3
 
getMaxR(double) - Method in class edu.davidson.chm.waveFunction.WaveFunction
Returns the maximum displacement from the nucleus at which the wave function has a value characterized by _fraction.
getMaxR() - Method in class electronDensity.ElectronDensity
Returns the current maximum displacement (in units of Zr/a)
getMaxTemperature() - Method in class calorimeter.Calorimeter
Gets the maximum temperature likely to be returned during a simulation.
getMaxVolume() - Method in class manometer.Manometer
Returns the volume of the left tube, excluding the base of the manometer.
getMessages() - Method in class chemEquilibria.ChemEquilibria
Returns an array of strings containing messages from the last analysis of the chemical system using the parse method.
getMessages() - Method in class edu.davidson.chm.equilibria.Equilibria
Returns the last set of messages generated by the parse method.
getMinTemperature() - Method in class calorimeter.Calorimeter
Gets the minimum temperature likely to be returned during a simulation.
getMinValue() - Method in class chemEquilibria.ChemEquilibria
Returns the minimum positive value for the moles of any species.
getMinValue() - Method in class edu.davidson.chm.equilibria.Equilibria
Returns the minimum positive value for the moles of any species.
getMoles(String, String) - Method in class chemEquilibria.ChemEquilibria
Returns the actual moles of ChemSpecies in the Phase.
getMoles() - Method in class edu.davidson.chm.equilibria.Phase
Returns the total moles of species in the phase
getMoles() - Method in class edu.davidson.chm.equilibria.Species
Returns the moles of the species.
getN() - Method in class edu.davidson.chm.waveFunction.HydrogenicWaveFunction
Returns the principal quantum number
getName() - Method in class showIsosurface.Atom
Provides the name of the atom
getNbrAtoms() - Method in class showMol.Molecule
Provides the number of atoms in the molecule.
getNbrAtoms() - Method in class showStructure.AtomGroup
 
getNbrCoordinates() - Method in class showIsosurface.Isosurface
Provides the number of coordinates in the geometry array.
getNbrIndices() - Method in class showIsosurface.Isosurface
Provides the number of coordinate indices in the geometry array.
getNbrMassBalance() - Method in class chemEquilibria.ChemEquilibria
Returns the number of mass balance equations for the system
getNbrMassBalance() - Method in class edu.davidson.chm.equilibria.Equilibria
Returns the number of mass balance equations for the system
getNbrParseMessages() - Method in class chemEquilibria.ChemEquilibria
Returns the number of messages from the last parse operation
getNbrPhases() - Method in class edu.davidson.chm.equilibria.ChemSystem
Returns the number of Phases in the Chemical System
getNbrPoints() - Method in class chemEquilibria.ChemEquilibria
Returns the number of points in the calculated titration curve
getNbrReactions() - Method in class edu.davidson.chm.equilibria.ChemSystem
Returns the number of Reactions in the Chemical System
getNbrSpecies() - Method in class edu.davidson.chm.equilibria.Phase
Returns the number of species in the phase
getNbrSpecies() - Method in class edu.davidson.chm.equilibria.Reaction
Returns the number of different species in the reaction
getNumberPoints(int) - Method in class data.Data
Gets number of points in a set
getNumberPoints() - Method in class data.DataSet
Gets the number of points in the data set
getOrbital(int) - Method in class showIsosurface.Atom
Provides the indicated Orbital object
getOrbitalName() - Method in class showIsosurface.Orbital
Returns the name of the orbital
getOwner() - Method in class balance.Balance
Gets the owner of this DataListener
getOwner() - Method in class calorimeter.Calorimeter
Gets the owner of the data source.
getOwner() - Method in class data.Data
SDataListener Method: Returns the owner of this SDataListener
getOwner() - Method in class manometer.Manometer
Gets the owner of this DataListener and DataSource
getOwner() - Method in class piston.Piston
Gets the owner of this DataListener and DataSource
getOwner() - Method in class piston3.Piston3
Gets the owner of this DataListener and DataSource
getOwner() - Method in class spectrophotometer.Spectrophotometer
Gets the owner of the data source.
getOwner() - Method in class stoppedFlow.StoppedFlow
Gets the owner of the data source.
getOwner() - Method in class thermometer.Thermometer
Gets the owner of this DataListener and DataSource
getPar(int) - Method in class chemEquilibria.ChemEquilibria
Returns the parameter with index _idx.
getPar() - Method in class edu.davidson.chm.equilibria.Titration
Returns an array containing the current values of the parameters from the last execution of the fit method.
getParameter(String, String) - Method in class balance.Balance
 
getParameter(String, String) - Method in class bulb.Bulb
 
getParameter(String, String) - Method in class bulbs.Bulbs
 
getParameter(String, String) - Method in class calorimeter.Calorimeter
 
getParameter(String, String) - Method in class chemEquilibria.ChemEquilibria
 
getParameter(String, String) - Method in class data.Data
 
getParameter(String, String) - Method in class electronDensity.ElectronDensity
 
getParameter(String, String) - Method in class manometer.Manometer
 
getParameter(String, String) - Method in class piston.Piston
 
getParameter(String, String) - Method in class piston3.Piston3
 
getParameter(String, String) - Method in class showHybrid.ShowHybrid
 
getParameter(String, String) - Method in class showIsosurface.ShowIsosurface
 
getParameter(String, String) - Method in class showMol.ShowMol
 
getParameter(String, String) - Method in class showStructure.ShowStructure
 
getParameter(String, String) - Method in class spectrophotometer.Spectrophotometer
 
getParameter(String, String) - Method in class stoppedFlow.StoppedFlow
 
getParameter(String, String) - Method in class thermometer.Thermometer
 
getParameterInfo() - Method in class balance.Balance
 
getParameterInfo() - Method in class bulb.Bulb
 
getParameterInfo() - Method in class bulbs.Bulbs
 
getParameterInfo() - Method in class calorimeter.Calorimeter
 
getParameterInfo() - Method in class chemEquilibria.ChemEquilibria
 
getParameterInfo() - Method in class data.Data
 
getParameterInfo() - Method in class electronDensity.ElectronDensity
 
getParameterInfo() - Method in class manometer.Manometer
 
getParameterInfo() - Method in class piston.Piston
 
getParameterInfo() - Method in class piston3.Piston3
 
getParameterInfo() - Method in class showHybrid.ShowHybrid
 
getParameterInfo() - Method in class showIsosurface.ShowIsosurface
 
getParameterInfo() - Method in class showMol.ShowMol
 
getParameterInfo() - Method in class showStructure.ShowStructure
 
getParameterInfo() - Method in class spectrophotometer.Spectrophotometer
 
getParameterInfo() - Method in class stoppedFlow.StoppedFlow
 
getParameterInfo() - Method in class thermometer.Thermometer
 
getParseMessage(int) - Method in class chemEquilibria.ChemEquilibria
Returns message _n from the last analysis of the chemical system using the parse method.
getParStd(int) - Method in class chemEquilibria.ChemEquilibria
Returns the standard deviation of parameter with index _idx.
getParStd() - Method in class edu.davidson.chm.equilibria.Titration
Returns an array containing the standard deviations of the parameters from the last execution of the fit method.
getpH(String) - Method in class chemEquilibria.ChemEquilibria
Returns the pH of the phase.
getpH() - Method in class edu.davidson.chm.equilibria.Phase
Returns the pH of the phase.
getpH() - Method in class edu.davidson.chm.equilibria.Solution
Returns the pH value for a protic solution.
getPhase(int) - Method in class edu.davidson.chm.equilibria.ChemSystem
Returns the phase at the requested index
getPhase(String) - Method in class edu.davidson.chm.equilibria.ChemSystem
Returns the phase with the given label
getPhase() - Method in class edu.davidson.chm.equilibria.HalfReaction
Returns the phase of the electrode
getPhase() - Method in class edu.davidson.chm.equilibria.Reaction
Returns the phase in which the reaction occurs.
getPhase() - Method in class edu.davidson.chm.equilibria.Species
Returns the phase in which the species exists
getPhases() - Method in class edu.davidson.chm.equilibria.ChemSystem
Returns an array of phases in the system
getPhysicalState() - Method in class edu.davidson.chm.equilibria.Phase
Returns the physical state of the phase.
getPhysicalState() - Method in class edu.davidson.chm.equilibria.Species
Returns the physical state of the species.
getpK(String) - Method in class chemEquilibria.ChemEquilibria
Returns pK for the reaction at the reference temperature
getpK(String, double) - Method in class chemEquilibria.ChemEquilibria
Returns pK for the reaction at the indicated temperature
getpK() - Method in class edu.davidson.chm.equilibria.Reaction
Returns pK for the reaction at the reference temperature
getpK(double) - Method in class edu.davidson.chm.equilibria.Reaction
Returns pK for the reaction at _temperature
getpOH(String) - Method in class chemEquilibria.ChemEquilibria
Returns the pOH of the phase.
getpOH() - Method in class edu.davidson.chm.equilibria.Phase
Returns the pOH of the phase.
getpOH() - Method in class edu.davidson.chm.equilibria.Solution
Returns the pOH value for a protic solution.
getPointTranslation(int) - Method in class showStructure.UnitCell
Returns the virtual world translation of the specified point.
getPotential(String) - Method in class chemEquilibria.ChemEquilibria
Returns the potential in volts for the indicated electrode.
getPotential(String, String) - Method in class chemEquilibria.ChemEquilibria
Returns the potential in volts for the indicated cell.
getPotential(Phase) - Method in class edu.davidson.chm.equilibria.ChemSystem
Returns the half-cell potential in volts for the indicated electrode at the system temperature.
getPotential(String) - Method in class edu.davidson.chm.equilibria.ChemSystem
Returns the half-cell potential in volts for the indicated electrode at the system temperature.
getPotential(Phase, Phase) - Method in class edu.davidson.chm.equilibria.ChemSystem
Returns the cell potential (potential of electrode1 minus that of electrode2) in volts at the system temperature.
getPotential(String, String) - Method in class edu.davidson.chm.equilibria.ChemSystem
Returns the cell potential (potential of electrode1 minus that of electrode2) in volts at the system temperature.
getPotential() - Method in class edu.davidson.chm.equilibria.HalfReaction
Returns the potential in volts for the half-reaction using the current activities of the reactants and products.
getPressure(String) - Method in class chemEquilibria.ChemEquilibria
Returns the pressure (in atm) of the Phase.
getPressure(String, String) - Method in class chemEquilibria.ChemEquilibria
Returns the partial pressure (in atm) of the ChemSpecies in the Phase.
getPressure() - Method in class edu.davidson.chm.equilibria.ChemSystem
Returns the system pressure in atmospheres
getPressure() - Method in class edu.davidson.chm.equilibria.Gas
Returns the pressure of the gas.
getPressure(double, double) - Method in class edu.davidson.chm.equilibria.Gas
Returns the pressure of a gas containing the indicated number of moles and the volume of the gas.
getPressure() - Method in class edu.davidson.chm.equilibria.Liquid
Returns the pressure of the liquid, which is the same as the system pressure.
getPressure() - Method in class edu.davidson.chm.equilibria.Phase
Returns the pressure of the phase.
getPressure(double, double) - Method in class edu.davidson.chm.equilibria.Phase
Returns the pressure of the phase for the specified number of moles and the indicated volume (in Liters).
getPressure() - Method in class edu.davidson.chm.equilibria.Solid
Returns the pressure of the solid, which is the same as the system pressure.
getPressure() - Method in class edu.davidson.chm.equilibria.Solution
Returns the pressure of the solution, which is the same as the system pressure.
getPressure() - Method in class edu.davidson.chm.equilibria.Species
Returns the partial pressure of the species in atmospheres.
getPressure() - Method in class manometer.Manometer
Returns the pressure in torr
getRadial(double) - Method in class edu.davidson.chm.waveFunction.HydrogenicWaveFunction
Returns the value of the radial component of the wave function for a given displacement x.
getReaction(int) - Method in class edu.davidson.chm.equilibria.ChemSystem
Returns the reaction at the requested index
getReaction(String) - Method in class edu.davidson.chm.equilibria.ChemSystem
Returns the reaction with the indicated label
getReactions() - Method in class edu.davidson.chm.equilibria.ChemSystem
Returns an array of the reactions in the system
getReferenceTemperature() - Method in class edu.davidson.chm.equilibria.HalfReaction
Returns the reference temperature for the standard potential
getReferenceTemperature() - Method in class edu.davidson.chm.equilibria.Reaction
Returns the reference temperature for the equilibrium constant
getRightHeight() - Method in class manometer.Manometer
Returns the height of the right (open side) column of mercury in millimeters.
getRightVolume() - Method in class bulbs.Bulbs
Returns the volume of the right bulb in liters
getRotation() - Method in class showHybrid.ShowHybrid
Provides the current setting for the system TransformGroup.
getRotation() - Method in class showIsosurface.ShowIsosurface
Provides the current setting for the system TransformGroup.
getRotationAngle() - Method in class electronDensity.ElectronDensity
Returns angle of rotation
getRotationAngle() - Method in class showHybrid.ShowHybrid
Returns the x component of the axis of rotation for the current transform
getRotationAngle() - Method in class showIsosurface.ShowIsosurface
Returns the x component of the axis of rotation for the current transform
getRotationX() - Method in class electronDensity.ElectronDensity
Returns the x coordinate for the axis of rotation.
getRotationX() - Method in class showHybrid.ShowHybrid
Returns the x component of the axis of rotation for the current transform
getRotationX() - Method in class showIsosurface.ShowIsosurface
Returns the x component of the axis of rotation for the current transform
getRotationY() - Method in class electronDensity.ElectronDensity
Returns the y coordinate for the axis of rotation.
getRotationY() - Method in class showHybrid.ShowHybrid
Returns the y component of the axis of rotation for the current transform
getRotationY() - Method in class showIsosurface.ShowIsosurface
Returns the y component of the axis of rotation for the current transform
getRotationZ() - Method in class electronDensity.ElectronDensity
Returns the z coordinate for the axis of rotation.
getRotationZ() - Method in class showHybrid.ShowHybrid
Returns the z component of the axis of rotation for the current transform
getRotationZ() - Method in class showIsosurface.ShowIsosurface
Returns the z component of the axis of rotation for the current transform
getScaleMaximum() - Method in class manometer.Manometer
Returns the maximum height of the scale (at the last major tick mark) in millimeters.
getSegmentTransform3D(int) - Method in class showStructure.SegmentGroup
 
getSegmentTransformGroup(int) - Method in class showStructure.SegmentGroup
 
getShape3D() - Method in class showIsosurface.Isosurface
Provides the Shape3D object for the isosurface
getShape3D() - Method in class showMol.Wire
Provides the Shape3D object for the wire frame.
getSolvent() - Method in class edu.davidson.chm.equilibria.Gas
Returns null, because this phase has no solvent
getSolvent() - Method in class edu.davidson.chm.equilibria.Liquid
Returns null, because this phase has no solvent
getSolvent() - Method in class edu.davidson.chm.equilibria.Phase
Returns the solvent species of a solution.
getSolvent() - Method in class edu.davidson.chm.equilibria.Solid
Returns null, because this phase has no solvent
getSolvent() - Method in class edu.davidson.chm.equilibria.Solution
Returns the solvent species of a solution.
getSpaceFillingTransformGroup() - Method in class showMol.Atom
Provides the TransformGroup for the Space Filling representation of the atom.
getSpecies() - Method in class edu.davidson.chm.equilibria.ChemSystem
Returns an array of species in the system
getSpecies(String) - Method in class edu.davidson.chm.equilibria.ChemSystem
Returns the species in the system with the given label.
getSpecies(String, String) - Method in class edu.davidson.chm.equilibria.ChemSystem
Returns the species in the system and in the indicated phase with the given label.
getSpecies() - Method in class edu.davidson.chm.equilibria.HalfReaction
Returns an array of the species involved in the reaction
getSpecies(String) - Method in class edu.davidson.chm.equilibria.Phase
Returns the species with the given label; returns null if the species does not exist.
getSpecies(ChemSpecies) - Method in class edu.davidson.chm.equilibria.Phase
Returns the Species with the given ChemSpecies.
getSpecies() - Method in class edu.davidson.chm.equilibria.Phase
Returns an array of species in the system
getSpecies() - Method in class edu.davidson.chm.equilibria.Reaction
Returns an array of the species involved in the reaction
getSpeciesAt(int) - Method in class edu.davidson.chm.equilibria.Phase
Returns species at given index
getStandardPotential(String, double) - Method in class chemEquilibria.ChemEquilibria
Returns the standard potential for the half-reaction at the indicated temperature
getStandardPotential() - Method in class edu.davidson.chm.equilibria.HalfReaction
Returns the standard potential in volts for the half-reaction at the reference potential
getStandardPotential(double) - Method in class edu.davidson.chm.equilibria.HalfReaction
Returns the standard potential in volts for the half-reaction at the indicated temperature
getSwitch() - Method in class showHybrid.OrbitalSet
Returns the Switch group for this orbital set.
getSymbol() - Method in class showMol.Atom
Provides the atomic symbol for this atom
getTemperature() - Method in class calorimeter.Calorimeter
Gets the current temperature, which includes noise.
getTemperature(double) - Method in class calorimeter.Calorimeter
Gets the temperature at a specific time in the simulation.
getTemperature() - Method in class chemEquilibria.ChemEquilibria
Returns the absolute temperature of the system.
getTemperature() - Method in class edu.davidson.chm.equilibria.ChemSystem
Returns the system temperature in Kelvin
getTemperature() - Method in class thermometer.Thermometer
Gets the current temperature.
getTemperatureDependence() - Method in class edu.davidson.chm.equilibria.HalfReaction
Returns an array containing the parameters a, b, and c characterizing the temperature dependence of the HalfReaction
getTemperatureDependence() - Method in class edu.davidson.chm.equilibria.Reaction
Returns an array containing the parameters a and b characterizing the temperature dependence of the Reaction
getTime() - Method in class spectrophotometer.Spectrophotometer
Gets the current timer time.
getTitrationValue(int) - Method in class chemEquilibria.ChemEquilibria
Gets the pX or E value in a calculated titration curve
getTolerance() - Method in class edu.davidson.chm.equilibria.Equilibria
Returns the tolerance for convergence of variables
getTransform3D() - Method in class showIsosurface.Atom
Method for obtaining the atom's TransformGroup transform
getTransformGroup() - Method in class showIsosurface.Atom
Method for obtaining the atom's TransformGroup
getTransformGroup() - Method in class showMol.Bond
Provides the TransformGroup for the bond.
getValue(double, double, double) - Method in class edu.davidson.chm.waveFunction.Gaussian
Returns the value of the basis function at r, theta, phi.
getValue(double, double, double) - Method in class edu.davidson.chm.waveFunction.HybridWaveFunction
Returns the value of the hybrid wave function at r, theta, phi
getValue(double, double, double) - Method in class edu.davidson.chm.waveFunction.HydrogenicWaveFunction
Returns a two-dimensional array containing the real and imaginary components of the wave function at a normalized displacement x and angles theta and phi.
getValue(double, double, double) - Method in class edu.davidson.chm.waveFunction.Orbital_2px
 
getValue(double, double, double) - Method in class edu.davidson.chm.waveFunction.Orbital_2py
 
getValue(double, double, double) - Method in class edu.davidson.chm.waveFunction.Orbital_3dx2_y2
 
getValue(double, double, double) - Method in class edu.davidson.chm.waveFunction.Orbital_3dxy
 
getValue(double, double, double) - Method in class edu.davidson.chm.waveFunction.Orbital_3dxz
 
getValue(double, double, double) - Method in class edu.davidson.chm.waveFunction.Orbital_3dyz
 
getValue(double, double, double) - Method in class edu.davidson.chm.waveFunction.Orbital_3px
 
getValue(double, double, double) - Method in class edu.davidson.chm.waveFunction.Orbital_3py
 
getValue(double, double, double) - Method in class edu.davidson.chm.waveFunction.Orbital_4dx2_y2
 
getValue(double, double, double) - Method in class edu.davidson.chm.waveFunction.Orbital_4dxy
 
getValue(double, double, double) - Method in class edu.davidson.chm.waveFunction.Orbital_4dxz
 
getValue(double, double, double) - Method in class edu.davidson.chm.waveFunction.Orbital_4dyz
 
getValue(double, double, double) - Method in class edu.davidson.chm.waveFunction.Orbital_4f5xz2_xr2
 
getValue(double, double, double) - Method in class edu.davidson.chm.waveFunction.Orbital_4f5yz2_yr2
 
getValue(double, double, double) - Method in class edu.davidson.chm.waveFunction.Orbital_4f5z3_3zr2
 
getValue(double, double, double) - Method in class edu.davidson.chm.waveFunction.Orbital_4fx3_3xy2
 
getValue(double, double, double) - Method in class edu.davidson.chm.waveFunction.Orbital_4fxyz
 
getValue(double, double, double) - Method in class edu.davidson.chm.waveFunction.Orbital_4fy3_3yx2
 
getValue(double, double, double) - Method in class edu.davidson.chm.waveFunction.Orbital_4fzx2_zy2
 
getValue(double, double, double) - Method in class edu.davidson.chm.waveFunction.Orbital_4px
 
getValue(double, double, double) - Method in class edu.davidson.chm.waveFunction.Orbital_4py
 
getValue(double, double, double) - Method in class edu.davidson.chm.waveFunction.Orbital_d2sp3
 
getValue(double, double, double) - Method in class edu.davidson.chm.waveFunction.Orbital_dsp2
 
getValue(double, double, double) - Method in class edu.davidson.chm.waveFunction.Orbital_dsp3ax
 
getValue(double, double, double) - Method in class edu.davidson.chm.waveFunction.Orbital_dsp3eq
 
getValue(double, double, double) - Method in class edu.davidson.chm.waveFunction.Orbital_sp
 
getValue(double, double, double) - Method in class edu.davidson.chm.waveFunction.Orbital_sp2
 
getValue(double, double, double) - Method in class edu.davidson.chm.waveFunction.Orbital_sp3
 
getValue(double, double, double) - Method in class edu.davidson.chm.waveFunction.WaveFunction
Returns the value of the wave function for a set of spherical coordinates _r (normalized distance from the nucleus), _theta (angle from the z axis), and _phi (angle from the x axis in the xy plane).
getValueXYZ(double, double, double) - Method in class edu.davidson.chm.waveFunction.Gaussian
Returns the value of the basis function at r, theta, phi.
getValueXYZ(double, double, double) - Method in class edu.davidson.chm.waveFunction.HybridWaveFunction
Returns the value of the wave function at the cartesian coordiantes
getValueXYZ(double, double, double) - Method in class edu.davidson.chm.waveFunction.HydrogenicWaveFunction
Returns the value of the wave function at the cartesian coordiantes
getValueXYZ(double, double, double) - Method in class edu.davidson.chm.waveFunction.Orbital_2px
 
getValueXYZ(double, double, double) - Method in class edu.davidson.chm.waveFunction.Orbital_2py
 
getValueXYZ(double, double, double) - Method in class edu.davidson.chm.waveFunction.Orbital_3dx2_y2
 
getValueXYZ(double, double, double) - Method in class edu.davidson.chm.waveFunction.Orbital_3dxy
 
getValueXYZ(double, double, double) - Method in class edu.davidson.chm.waveFunction.Orbital_3dxz
 
getValueXYZ(double, double, double) - Method in class edu.davidson.chm.waveFunction.Orbital_3dyz
 
getValueXYZ(double, double, double) - Method in class edu.davidson.chm.waveFunction.Orbital_3px
 
getValueXYZ(double, double, double) - Method in class edu.davidson.chm.waveFunction.Orbital_3py
 
getValueXYZ(double, double, double) - Method in class edu.davidson.chm.waveFunction.Orbital_4dx2_y2
 
getValueXYZ(double, double, double) - Method in class edu.davidson.chm.waveFunction.Orbital_4dxy
 
getValueXYZ(double, double, double) - Method in class edu.davidson.chm.waveFunction.Orbital_4dxz
 
getValueXYZ(double, double, double) - Method in class edu.davidson.chm.waveFunction.Orbital_4dyz
 
getValueXYZ(double, double, double) - Method in class edu.davidson.chm.waveFunction.Orbital_4f5xz2_xr2
 
getValueXYZ(double, double, double) - Method in class edu.davidson.chm.waveFunction.Orbital_4f5yz2_yr2
 
getValueXYZ(double, double, double) - Method in class edu.davidson.chm.waveFunction.Orbital_4f5z3_3zr2
 
getValueXYZ(double, double, double) - Method in class edu.davidson.chm.waveFunction.Orbital_4fx3_3xy2
 
getValueXYZ(double, double, double) - Method in class edu.davidson.chm.waveFunction.Orbital_4fxyz
 
getValueXYZ(double, double, double) - Method in class edu.davidson.chm.waveFunction.Orbital_4fy3_3yx2
 
getValueXYZ(double, double, double) - Method in class edu.davidson.chm.waveFunction.Orbital_4fzx2_zy2
 
getValueXYZ(double, double, double) - Method in class edu.davidson.chm.waveFunction.Orbital_4px
 
getValueXYZ(double, double, double) - Method in class edu.davidson.chm.waveFunction.Orbital_4py
 
getValueXYZ(double, double, double) - Method in class edu.davidson.chm.waveFunction.Orbital_d2sp3
 
getValueXYZ(double, double, double) - Method in class edu.davidson.chm.waveFunction.Orbital_dsp2
 
getValueXYZ(double, double, double) - Method in class edu.davidson.chm.waveFunction.Orbital_dsp3ax
 
getValueXYZ(double, double, double) - Method in class edu.davidson.chm.waveFunction.Orbital_dsp3eq
 
getValueXYZ(double, double, double) - Method in class edu.davidson.chm.waveFunction.Orbital_sp
 
getValueXYZ(double, double, double) - Method in class edu.davidson.chm.waveFunction.Orbital_sp2
 
getValueXYZ(double, double, double) - Method in class edu.davidson.chm.waveFunction.Orbital_sp3
 
getValueXYZ(double, double, double) - Method in class edu.davidson.chm.waveFunction.WaveFunction
Returns the value of the wave function for a set of cartesian coordinates.
getVariables() - Method in class calorimeter.Calorimeter
Gets the values of the variables for the data source.
getVariables() - Method in class manometer.Manometer
SDataSource method returning the current variables.
getVariables() - Method in class piston.Piston
SDataSource method returning the current variables.
getVariables() - Method in class piston3.Piston3
SDataSource method returning the current variables.
getVariables() - Method in class spectrophotometer.Spectrophotometer
Gets the values of the variables for SDataSource.
element [0][0] is the time as provided by the timer, which might be disabled
element [0][1] is the number of photons emitted by the light source
element [0][2] is the number of photons detected by the detector
element [0][3] is the intensity (photons/sec), which is zero if the timer is off
element [0][4] is the transmittance, which is zero if the timer is off
element [0][5] is the absorbance, which is zero if the timer is off
The transmittance and absorbance are determined using the reference intensity, if it is defined; otherwise the source intensity is used.
getVariables() - Method in class stoppedFlow.StoppedFlow
Gets the values of the variables for SDataSource.
element [0][0] is the time as provided by the timer, which might be disabled
element [0][1] is the number of photons emitted by the light source
element [0][2] is the number of photons detected by the detector
element [0][3] is the intensity (photons/sec), which is zero if the timer is off
element [0][4] is the transmittance, which is zero if the timer is off
element [0][5] is the absorbance, which is zero if the timer is off
The transmittance and absorbance are determined using the reference intensity, if it is defined; otherwise the source intensity is used.
getVariables() - Method in class thermometer.Thermometer
SDataSource method.
getVarStrings() - Method in class calorimeter.Calorimeter
Gets the variable strings that the data source supplied.
getVarStrings() - Method in class manometer.Manometer
SDataSource method returning variable strings.
getVarStrings() - Method in class piston.Piston
SDataSource method returning variable strings.
getVarStrings() - Method in class piston3.Piston3
SDataSource method returning variable strings.
getVarStrings() - Method in class spectrophotometer.Spectrophotometer
Returns an array of the variable names supplied by this SDataSource.
t is the simulation time in seconds
s is the number of photons emitted by the source
d is the number of photons that have reached the detector
I is the measured photon intensity
T is the measured transmittance
A is the measured absorbance
getVarStrings() - Method in class stoppedFlow.StoppedFlow
Returns an array of the variable names supplied by this SDataSource.
t is the simulation time in seconds
A is the absorbance
C0 through C7 are concentrations of species 0 through 7
getVarStrings() - Method in class thermometer.Thermometer
SDataSource method.
getVolume() - Method in class bulbs.Bulbs
Returns the volume of the two bulbs in liters.
getVolume(String) - Method in class chemEquilibria.ChemEquilibria
Returns the actual volume (in liters) of the phase.
getVolume() - Method in class edu.davidson.chm.equilibria.Gas
Returns the volume of the gas.
getVolume() - Method in class edu.davidson.chm.equilibria.Liquid
Returns the volume of the phase in liters
getVolume() - Method in class edu.davidson.chm.equilibria.Phase
Returns the volume of the phase in liters
getVolume() - Method in class edu.davidson.chm.equilibria.Solid
Returns the volume of the phase in liters
getVolume() - Method in class edu.davidson.chm.equilibria.Solution
Returns the volume of the phase in liters
getVolume() - Method in class manometer.Manometer
Returns the volume of the sealed tube above the liquid.
getVolume() - Method in class piston.Piston
Returns the volume of the piston
getVolume() - Method in class piston3.Piston3
Returns the volume (in mL) of the piston
getVolume(int) - Method in class piston3.Piston3
Returns the volume (in mL) of the region (1, 2, or 3).
getVolumes() - Method in class piston3.Piston3
Returns an array containing the volumes (in mL) of regions 1, 2, and 3.
getVolumeTitrant(int) - Method in class chemEquilibria.ChemEquilibria
Gets the volume (in mL) of titrant added in a calculated titration curve
getWater() - Method in class edu.davidson.chm.equilibria.ChemSystem
Returns the Water chemical species for this chemical system
getWires() - Method in class showMol.MoleculeLoader
Provides an array containing the Wire objects for this molecule.
getXFactor() - Method in class showHybrid.MouseRot
Return the x-axis movement multipler.
getYFactor() - Method in class showHybrid.MouseRot
Return the y-axis movement multipler.
groupTG - Variable in class showStructure.LineGroup
 
groupTG - Variable in class showStructure.SegmentGroup
 

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