A B C D E F G H I K L M N O P Q R S T U V W X Y Z

R

R - Static variable in interface edu.davidson.chm.equilibria.PhysicalConstants

r - Variable in class showStructure.SegmentGroup

Reaction - Class in edu.davidson.chm.equilibria

This class contains the stoichiometric description of a chemical reaction.

Reaction() - Constructor for class edu.davidson.chm.equilibria.Reaction

This constructor should never be used.

Reaction(Species[], double[], double) - Constructor for class edu.davidson.chm.equilibria.Reaction

Constructs a Reaction based upon a list of species and their stoichiometric coefficients.

Reaction(String, Species[], double[], double) - Constructor for class edu.davidson.chm.equilibria.Reaction

Constructs a Reaction based upon a list of species and their stoichiometric coefficients.

removeHalfReaction(String) - Method in class chemEquilibria.ChemEquilibria

Removes the half-reaction from the chemical system

removeHalfReaction(HalfReaction) - Method in class edu.davidson.chm.equilibria.ChemSystem

Removes the half-reaction from the chemical system.

removeHalfReaction(String) - Method in class edu.davidson.chm.equilibria.ChemSystem

Removes the half-reaction from the chemical system.

removePhase(String) - Method in class chemEquilibria.ChemEquilibria

Removes the phase from the chemical system.

removePhase(Phase) - Method in class edu.davidson.chm.equilibria.ChemSystem

Removes the phase from the chemical system.

removePhase(String) - Method in class edu.davidson.chm.equilibria.ChemSystem

Removes the phase with the given label from the chemical system

removeReaction(String) - Method in class chemEquilibria.ChemEquilibria

Removes the reaction from the chemical system

removeReaction(Reaction) - Method in class edu.davidson.chm.equilibria.ChemSystem

Removes the reaction from the chemical system.

removeReaction(String) - Method in class edu.davidson.chm.equilibria.ChemSystem

Removes the reaction with the given label from the chemical system

removeSpecies(String, String) - Method in class chemEquilibria.ChemEquilibria

Removes the species from the phase.

removeSpecies(Species) - Method in class edu.davidson.chm.equilibria.Phase

Removes the species from the phase.

removeSpecies(String) - Method in class edu.davidson.chm.equilibria.Phase

Removes the species with the given label.

replot() - Method in class electronDensity.ElectronDensity

Replots the electron density plot.

RESERVED - Variable in class edu.davidson.chm.equilibria.Species

resetAnimation() - Method in class showStructure.ShowStructure

resetSimulation() - Method in class calorimeter.Calorimeter

Resets the simulation.

resetSimulation() - Method in class spectrophotometer.Spectrophotometer

Resets the simulation.

resetSimulation() - Method in class stoppedFlow.StoppedFlow

Resets the simulation.

resetView() - Method in class electronDensity.ElectronDensity

Resets the rotation vector to the default xy plane view

RJ - Static variable in interface edu.davidson.chm.equilibria.PhysicalConstants

ROTATE_ALL - Variable in class showIsosurface.ShowIsosurface

ROTATE_INDIVIDUAL - Variable in class showIsosurface.ShowIsosurface

ROTATE_SCENE - Variable in class showIsosurface.ShowIsosurface

rotateSpheres(double, double, double, double) - Method in class showHybrid.ShowHybrid

Rotates the spheres.

rotX(double, Point3d[]) - Method in class showStructure.SegmentGroup

Rotates a set a points around the x axis

rotY(double, Point3d[]) - Method in class showStructure.SegmentGroup

Rotates a set a points around the y axis

rotZ(double, Point3d[]) - Method in class showStructure.SegmentGroup

Rotates a set a points around the z axis

run() - Method in class calorimeter.Calorimeter

run() - Method in class electronDensity.ElectronDensity

run() - Method in class showStructure.ShowStructure